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This page was generated on 2022-01-27 11:07:15 -0500 (Thu, 27 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4167
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4062
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4004
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4121
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for GenomicFeatures on riesling1


To the developers/maintainers of the GenomicFeatures package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomicFeatures.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 749/2077HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicFeatures 1.47.7  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-01-26 13:55:18 -0500 (Wed, 26 Jan 2022)
git_url: https://git.bioconductor.org/packages/GenomicFeatures
git_branch: master
git_last_commit: dd8aaa6
git_last_commit_date: 2022-01-19 22:39:14 -0500 (Wed, 19 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    NA  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'BiocGenerics' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: GenomicFeatures
Version: 1.47.7
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL GenomicFeatures
StartedAt: 2022-01-26 15:58:57 -0500 (Wed, 26 Jan 2022)
EndedAt: 2022-01-26 16:00:17 -0500 (Wed, 26 Jan 2022)
EllapsedTime: 80.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL GenomicFeatures
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'GenomicFeatures' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicFeatures'
    finding HTML links ... done
    FeatureDb-class                         html  
    finding level-2 HTML links ... done

    TxDb-class                              html  
    as-format-methods                       html  
    coordinate-mapping-methods              html  
    coverageByTranscript                    html  
    disjointExons                           html  
    exonicParts                             html  
    extractTranscriptSeqs                   html  
    extractUpstreamSeqs                     html  
    features                                html  
    getPromoterSeq-methods                  html  
    id2name                                 html  
    makeFeatureDbFromUCSC                   html  
    makeTxDb                                html  
    makeTxDbFromBiomart                     html  
    makeTxDbFromEnsembl                     html  
    makeTxDbFromGFF                         html  
    makeTxDbFromGRanges                     html  
    makeTxDbFromUCSC                        html  
    makeTxDbPackage                         html  
    mapIdsToRanges                          html  
    mapRangesToIds                          html  
    microRNAs                               html  
    nearest-methods                         html  
    select-methods                          html  
    transcriptLengths                       html  
    transcriptLocs2refLocs                  html  
    transcripts                             html  
    transcriptsBy                           html  
    transcriptsByOverlaps                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomicFeatures)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'TimiRGeN' is missing or broken
 done