############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r GenomeInfoDb -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GenomeInfoDb ### ############################################################################## ############################################################################## * checking for file 'GenomeInfoDb/DESCRIPTION' ... OK * preparing 'GenomeInfoDb': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'Accept-organism-for-GenomeInfoDb.Rmd' using rmarkdown --- finished re-building 'Accept-organism-for-GenomeInfoDb.Rmd' --- re-building 'GenomeInfoDb.Rnw' using knitr texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "GenomeInfoDb.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'GenomeInfoDb.Rnw' failed with diagnostics: running 'texi2dvi' on 'GenomeInfoDb.tex' failed LaTeX errors: nettes/GenomeInfoDb.tex:64: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:96: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:120: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:141: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:156: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:173: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:189: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:216: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:251: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:267: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:290: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:308: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:324: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:358: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:405: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:433: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:462: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:489: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:515: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:709: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... nettes/GenomeInfoDb.tex:765: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... --- failed re-building 'GenomeInfoDb.Rnw' SUMMARY: processing the following file failed: 'GenomeInfoDb.Rnw' Error: Vignette re-building failed. Execution halted