############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL GeneSelectMMD ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘GeneSelectMMD’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GeneSelectMMD_init.c -o GeneSelectMMD_init.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c Qfunc.f -o Qfunc.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c blas.f -o blas.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c isnan.c -o isnan.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c lbfgsb.f -o lbfgsb.o lbfgsb.f:1409:25: 1409 | + tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm, | ^ Warning: ‘tu’ may be used uninitialized [-Wmaybe-uninitialized] lbfgsb.f:1482:72: 1482 | t(nbreak) = tl/(-neggi) | ^ Warning: ‘tl’ may be used uninitialized [-Wmaybe-uninitialized] lbfgsb.f:1409:28: 1409 | + tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm, | ^ note: ‘tl’ was declared here /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c lbfgsbDriver.f -o lbfgsbDriver.o lbfgsbDriver.f:243:71: 243 | + wa(2*mmax*nmax + 5*nmax + 11*mmax*mmax + 8*mmax) | 1 Warning: Array ‘wa’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c linpack.f -o linpack.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c llkhFun.f -o llkhFun.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c myTtest.f -o myTtest.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c paraEstLoop.f -o paraEstLoop.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pt.c -o pt.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c timer.f -o timer.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c wiFun.f -o wiFun.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o GeneSelectMMD.so GeneSelectMMD_init.o Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GeneSelectMMD)