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This page was generated on 2022-01-24 11:07:24 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for GeneGeneInteR on riesling1


To the developers/maintainers of the GeneGeneInteR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneGeneInteR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 722/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneGeneInteR 1.21.0  (landing page)
Mathieu Emily
Snapshot Date: 2022-01-23 13:55:15 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/GeneGeneInteR
git_branch: master
git_last_commit: 3b01086
git_last_commit_date: 2021-10-26 12:29:11 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'snpStats' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GeneGeneInteR
Version: 1.21.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL GeneGeneInteR
StartedAt: 2022-01-23 16:04:48 -0500 (Sun, 23 Jan 2022)
EndedAt: 2022-01-23 16:05:40 -0500 (Sun, 23 Jan 2022)
EllapsedTime: 51.7 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL GeneGeneInteR
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'GeneGeneInteR' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c chclust.cpp -o chclust.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GeneGeneInteR.dll tmp.def chclust.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-GeneGeneInteR/00new/GeneGeneInteR/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GeneGeneInteR'
    finding HTML links ... done
    CCA.test                                html  
    CLD.test                                html  
    GBIGM.test                              html  
    GGI                                     html  
    KCCA.test                               html  
    PCA.test                                html  
    PLSPM.test                              html  
    data.SNP                                html  
    gates.test                              html  
    gene.pair                               html  
    importFile                              html  
    imputeSnpMatrix                         html  
    minP.test                               html  
    plot.GGInetwork                         html  
    print.GGItest                           html  
    selectSnps                              html  
    snpMatrixScour                          html  
    summary.GGInetwork                      html  
    summary.GGItest                         html  
    tProd.test                              html  
    tTS.test                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GeneGeneInteR)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'RCAS' is missing or broken
 done