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This page was generated on 2022-01-28 11:07:56 -0500 (Fri, 28 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4167
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4062
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4004
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4121
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for GSEABase on riesling1


To the developers/maintainers of the GSEABase package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSEABase.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 830/2077HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSEABase 1.57.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-01-27 13:55:17 -0500 (Thu, 27 Jan 2022)
git_url: https://git.bioconductor.org/packages/GSEABase
git_branch: master
git_last_commit: c9a3c77
git_last_commit_date: 2021-10-26 11:51:15 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'BiocGenerics' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GSEABase
Version: 1.57.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL GSEABase
StartedAt: 2022-01-27 15:47:57 -0500 (Thu, 27 Jan 2022)
EndedAt: 2022-01-27 15:48:58 -0500 (Thu, 27 Jan 2022)
EllapsedTime: 61.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL GSEABase
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'GSEABase' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GSEABase'
    finding HTML links ... done
    CollectionType-class                    html  
    CollectionType-constructors             html  
    GSEABase-package                        html  
    GeneColorSet-class                      html  
    GeneColorSet-methods                    html  
    GeneIdentifierType-class                html  
    GeneIdentifierType-constructors         html  
    GeneSet-class                           html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-GSEABase/00new/GSEABase/help/collectionType.html
    GeneSet-methods                         html  
    GeneSetCollection-class                 html  
    GeneSetCollection-methods               html  
    OBOCollection-class                     html  
    details-methods                         html  
    getOBOCollection                        html  
    getObjects                              html  
    goSlim-methods                          html  
    incidence-methods                       html  
    mapIdentifiers-methods                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GSEABase)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'MouseFM' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'SMAD' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'tracktables' is missing or broken
 done