############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSCA ### ############################################################################## ############################################################################## * checking for file ‘GSCA/DESCRIPTION’ ... OK * preparing ‘GSCA’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GSCA.Rnw’ using Sweave Loading required package: shiny Loading required package: sp Loading required package: gplots Attaching package: ‘gplots’ The following object is masked from ‘package:stats’: lowess Loading required package: ggplot2 Loading required package: reshape2 Loading required package: RColorBrewer Loading required package: rhdf5 Warning in readChar(con, 5L, useBytes = TRUE) : cannot open compressed file '/geneid.rda', probable reason 'No such file or directory' Error: processing vignette 'GSCA.Rnw' failed with diagnostics: chunk 4 Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection --- failed re-building ‘GSCA.Rnw’ SUMMARY: processing the following file failed: ‘GSCA.Rnw’ Error: Vignette re-building failed. Execution halted