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This page was generated on 2022-11-30 11:05:51 -0500 (Wed, 30 Nov 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2022-10-25 r83175) -- "Unsuffered Consequences" 4462
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-10-11 r83083 ucrt) -- "Unsuffered Consequences" 4201
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-11-13 r83342) -- "Unsuffered Consequences" 4231
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for GGPA on nebbiolo1


To the developers/maintainers of the GGPA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GGPA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 801/2154HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GGPA 1.11.0  (landing page)
Dongjun Chung
Snapshot Date: 2022-11-29 14:00:14 -0500 (Tue, 29 Nov 2022)
git_url: https://git.bioconductor.org/packages/GGPA
git_branch: master
git_last_commit: ae08b0a
git_last_commit_date: 2022-11-01 11:21:51 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GGPA
Version: 1.11.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL GGPA
StartedAt: 2022-11-29 15:07:51 -0500 (Tue, 29 Nov 2022)
EndedAt: 2022-11-29 15:08:28 -0500 (Tue, 29 Nov 2022)
EllapsedTime: 37.1 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL GGPA
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘GGPA’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c 1_Main.cpp -o 1_Main.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c 3_Param.cpp -o 3_Param.o
3_Param.cpp: In member function ‘void CParam::S6_G_beta_ij(CData&)’:
3_Param.cpp:350:47: warning: ‘normC_prop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  350 |     Beta = Beta_prop ; G_mat = G_prop ; normC = normC_prop ;
      |                                         ~~~~~~^~~~~~~~~~~~
3_Param.cpp:335:39: warning: ‘logP_denom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  335 |           if ( w_cur > 0 ) logP_denom = logP_denom - log(w_cur) ; // f(G) // if w_cur=0, let 1/w_cur = 1, so that log(w_cur) = 0
      |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
3_Param.cpp:334:40: warning: ‘logP_numer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  334 |           if ( w_prop > 0 ) logP_numer = logP_numer - log(w_prop) ; // f(G^q) // if w_prop=0, let 1/w_prop = 1, so that log(w_prop) = 0
      |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c Gibbs_e_it_no_ann.cpp -o Gibbs_e_it_no_ann.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o GGPA.so 1_Main.o 3_Param.o Gibbs_e_it_no_ann.o RcppExports.o -llapack -L/home/biocbuild/bbs-3.17-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-GGPA/00new/GGPA/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GGPA)