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This page was generated on 2022-01-28 11:06:06 -0500 (Fri, 28 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4167
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4062
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4004
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4121
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for FunChIP on nebbiolo1


To the developers/maintainers of the FunChIP package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FunChIP.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 687/2077HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FunChIP 1.21.1  (landing page)
Alice Parodi
Snapshot Date: 2022-01-27 13:55:17 -0500 (Thu, 27 Jan 2022)
git_url: https://git.bioconductor.org/packages/FunChIP
git_branch: master
git_last_commit: 8b6848d
git_last_commit_date: 2021-11-20 04:02:50 -0500 (Sat, 20 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'GenomicRanges' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: FunChIP
Version: 1.21.1
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL FunChIP
StartedAt: 2022-01-27 15:37:05 -0500 (Thu, 27 Jan 2022)
EndedAt: 2022-01-27 15:37:38 -0500 (Thu, 27 Jan 2022)
EllapsedTime: 32.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL FunChIP
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘FunChIP’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I/usr/local/include  `/home/biocbuild/bbs-3.15-bioc/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -fpic  -g -O2  -Wall -c kmean_function.cpp -o kmean_function.o
kmean_function.cpp: In function ‘SEXPREC* kmean_function(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
kmean_function.cpp:74:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   74 |     for (unsigned int i =0 ; i<num_data; i++){
      |                              ~^~~~~~~~~
kmean_function.cpp:80:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   80 |       for (unsigned int t =0 ; t < num_points; t++)
      |                                ~~^~~~~~~~~~~~
kmean_function.cpp: In function ‘SEXPREC* distance_matrix(SEXP, SEXP, SEXP, SEXP, SEXP)’:
kmean_function.cpp:210:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  210 |         for (unsigned int i =0 ; i<num_data; i++){
      |                                  ~^~~~~~~~~
kmean_function.cpp:216:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  216 |             for (unsigned int t =0 ; t < num_points; t++)
      |                                      ~~^~~~~~~~~~~~
kmean_function.cpp: In function ‘void kma_discrete(std::vector<peak>&, const int&, std::vector<int>&, const double&, const double&, const int&, const char&, const double&, const double&, std::vector<int>&, std::vector<double>&, std::vector<int>&, const double&, const double&, int, char, char)’:
kmean_function.cpp:638:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<peak>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  638 |   while( iter < iter_max and number_distances_low < dati.size()  and cluster_vuoti==0){  //and number_clusters_different > 0
      |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
kmean_function.cpp:677:52: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
  677 |       if ( (unsigned int)number_clusters_different == dati.size() & iter != 1)
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
kmean_function.cpp:681:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<peak>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  681 |       if (number_distances_low== dati.size())
      |           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
kmean_function.cpp: In function ‘void normalize_data(std::vector<int>&, std::vector<int>&, const int&)’:
kmean_function.cpp:759:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
  759 |   for (unsigned int i=0; i<n_clust; i++)
      |                          ~^~~~~~~~
In file included from kmean_function.cpp:1:
peak.h: In member function ‘std::vector<double> peak::area(int, char) const’:
peak.h:154:46: warning: ‘D’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  154 |                 area_def[0] = sqrt(area[0]/2)/D;
      |                               ~~~~~~~~~~~~~~~^~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.15-bioc/R/lib -L/usr/local/lib -o FunChIP.so kmean_function.o -L/home/biocbuild/bbs-3.15-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.15-bioc/R/library/00LOCK-FunChIP/00new/FunChIP/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FunChIP)