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This page was generated on 2022-01-21 11:07:30 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for FindIT2 on riesling1


To the developers/maintainers of the FindIT2 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FindIT2.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 640/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FindIT2 1.1.3  (landing page)
Guandong Shang
Snapshot Date: 2022-01-20 13:55:17 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/FindIT2
git_branch: master
git_last_commit: 4c4fab3
git_last_commit_date: 2021-12-28 22:18:58 -0500 (Tue, 28 Dec 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: FindIT2
Version: 1.1.3
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL FindIT2
StartedAt: 2022-01-20 15:59:23 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 16:00:51 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 87.2 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL FindIT2
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'FindIT2' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'FindIT2'
    finding HTML links ... done
    ATAC_normCount                          html  
    RNADiff_LEC2_GR                         html  
    RNA_normCount                           html  
    TF_target_database                      html  
    calcRP_TFHit                            html  
    calcRP_coverage                         html  
    calcRP_region                           html  
    enhancerPromoterCor                     html  
    findIT_MARA                             html  
    findIT_TFHit                            html  
    findIT_TTPair                           html  
    findIT_enrichFisher                     html  
    findIT_enrichWilcox                     html  
    findIT_regionRP                         html  
    getAssocPairNumber                      html  
    integrate_ChIP_RNA                      html  
    integrate_replicates                    html  
    jaccard_findIT_TTpair                   html  
    jaccard_findIT_enrichFisher             html  
    loadPeakFile                            html  
    mm_geneBound                            html  
    mm_geneScan                             html  
    mm_nearestGene                          html  
    peakGeneCor                             html  
    plot_annoDistance                       html  
    plot_peakGeneAlias_summary              html  
    plot_peakGeneCor                        html  
    test_featureSet                         html  
    test_geneSet                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FindIT2)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'VarCon' is missing or broken
 done