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This page was generated on 2022-01-24 11:07:17 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for EventPointer on riesling1


To the developers/maintainers of the EventPointer package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EventPointer.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 607/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EventPointer 3.3.1  (landing page)
Juan A. Ferrer-Bonsoms
Snapshot Date: 2022-01-23 13:55:15 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/EventPointer
git_branch: master
git_last_commit: f6f00a0
git_last_commit_date: 2021-11-20 23:53:56 -0500 (Sat, 20 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'SGSeq' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: EventPointer
Version: 3.3.1
Command: rm -rf EventPointer.buildbin-libdir && mkdir EventPointer.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=EventPointer.buildbin-libdir EventPointer_3.3.1.tar.gz
StartedAt: 2022-01-23 20:54:30 -0500 (Sun, 23 Jan 2022)
EndedAt: 2022-01-23 20:55:27 -0500 (Sun, 23 Jan 2022)
EllapsedTime: 57.7 seconds
RetCode: 0
Status:   OK  
PackageFile: EventPointer_3.3.1.zip
PackageFileSize: 1.343 MiB

Command output

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###
### Running command:
###
###   rm -rf EventPointer.buildbin-libdir && mkdir EventPointer.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=EventPointer.buildbin-libdir EventPointer_3.3.1.tar.gz
###
##############################################################################
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* installing *source* package 'EventPointer' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c dgl.c -o dgl.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c params.c -o params.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c pgl.c -o pgl.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c qdgl.c -o qdgl.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c qgl.c -o qgl.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c rgl.c -o rgl.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o EventPointer.dll tmp.def dgl.o params.o pgl.o qdgl.o qgl.o rgl.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/EventPointer.buildbin-libdir/00LOCK-EventPointer/00new/EventPointer/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'EventPointer'
    finding HTML links ... done
    AllEvents_RNASeq                        html  
    AllEvents_RNASeq_MP                     html  
    ArrayDatamultipath                      html  
    ArraysData                              html  
    CDFfromGTF                              html  
    CDFfromGTF_Multipath                    html  
    CreateExSmatrix                         html  
    EventDetection                          html  
    EventDetectionMultipath                 html  
    EventDetection_transcriptome            html  
    EventPointer                            html  
    EventPointer_Bootstraps                 html  
    EventPointer_IGV                        html  
    EventPointer_RNASeq                     html  
    EventPointer_RNASeq_IGV                 html  
    EventPointer_RNASeq_TranRef             html  
    EventPointer_RNASeq_TranRef_IGV         html  
    EventXtrans                             html  
    FindPrimers                             html  
    Fit                                     html  
    GetPSI_FromTranRef                      html  
    InternalFunctions                       html  
    MyPrimers                               html  
    MyPrimers_taqman                        html  
    PSI_Statistic                           html  
    PSIss                                   html  
    PrepareBam_EP                           html  
    Protein_Domain_Enrichment               html  
    ResulTable                              html  
    SF_Prediction                           html  
    SG_RNASeq                               html  
    TxD                                     html  
    getbootstrapdata                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'EventPointer' as EventPointer_3.3.1.zip
* DONE (EventPointer)