Back to Multiple platform build/check report for BioC 3.16
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-08-11 11:08:07 -0400 (Thu, 11 Aug 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4375
palomino4Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4159
lconwaymacOS 12.2.1 Montereyx86_644.2.1 Patched (2022-07-09 r82577) -- "Funny-Looking Kid" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for EventPointer on lconway


To the developers/maintainers of the EventPointer package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EventPointer.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 627/2139HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EventPointer 3.5.1  (landing page)
Juan A. Ferrer-Bonsoms
Snapshot Date: 2022-08-10 14:00:02 -0400 (Wed, 10 Aug 2022)
git_url: https://git.bioconductor.org/packages/EventPointer
git_branch: master
git_last_commit: 1e8942d
git_last_commit_date: 2022-06-09 03:16:15 -0400 (Thu, 09 Jun 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: EventPointer
Version: 3.5.1
Command: rm -rf EventPointer.buildbin-libdir && mkdir EventPointer.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh EventPointer_3.5.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R EventPointer.buildbin-libdir
StartedAt: 2022-08-10 23:39:52 -0400 (Wed, 10 Aug 2022)
EndedAt: 2022-08-10 23:40:56 -0400 (Wed, 10 Aug 2022)
EllapsedTime: 63.8 seconds
RetCode: 0
Status:   OK  
PackageFile: EventPointer_3.5.1.tgz
PackageFileSize: 1.314 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf EventPointer.buildbin-libdir && mkdir EventPointer.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh EventPointer_3.5.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R EventPointer.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=EventPointer.buildbin-libdir EventPointer_3.5.1.tar.gz'
>>>>>>> 

* installing *source* package ‘EventPointer’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c dgl.c -o dgl.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c params.c -o params.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pgl.c -o pgl.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c qdgl.c -o qdgl.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c qgl.c -o qgl.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rgl.c -o rgl.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o EventPointer.so dgl.o params.o pgl.o qdgl.o qgl.o rgl.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.16-bioc/meat/EventPointer.buildbin-libdir/00LOCK-EventPointer/00new/EventPointer/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EventPointer)


>>>>>>> 
>>>>>>> FIXING LINKS FOR EventPointer.buildbin-libdir/EventPointer/libs/EventPointer.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "EventPointer.buildbin-libdir/EventPointer/libs/EventPointer.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "EventPointer.buildbin-libdir/EventPointer/libs/EventPointer.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "EventPointer.buildbin-libdir/EventPointer/libs/EventPointer.so"