Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-27 11:07:07 -0500 (Thu, 27 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4167
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4062
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4004
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4121
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ELMER on riesling1


To the developers/maintainers of the ELMER package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ELMER.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 573/2077HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ELMER 2.19.0  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2022-01-26 13:55:18 -0500 (Wed, 26 Jan 2022)
git_url: https://git.bioconductor.org/packages/ELMER
git_branch: master
git_last_commit: cc0e36c
git_last_commit_date: 2021-11-09 11:00:18 -0500 (Tue, 09 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    ERROR  
riesling1Windows Server 2019 Standard / x64  OK    OK    ERROR    NA  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: ELMER
Version: 2.19.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ELMER
StartedAt: 2022-01-26 16:08:33 -0500 (Wed, 26 Jan 2022)
EndedAt: 2022-01-26 16:10:03 -0500 (Wed, 26 Jan 2022)
EllapsedTime: 90.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ELMER
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'ELMER' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ELMER'
    finding HTML links ... done
    ELMER                                   html  
    Get.Pvalue.p                            html  
    GetNearGenes                            html  
    Stat.diff.meth                          html  
    Stat.nonpara                            html  
    Stat.nonpara.permu                      html  
    TCGA.pipe                               html  
    TF.rank.plot                            html  
    TFsurvival.plot                         html  
    addDistNearestTSS                       html  
    addMutCol                               html  
    calcDistNearestTSS                      html  
    calculateEnrichement                    html  
    createBigWigDNAmetArray                 html  
    createIGVtrack                          html  
    createMAE                               html  
    createMotifRelevantTfs                  html  
    createSummaryDocument                   html  
    createTSVTemplates                      html  
    findMotifRegion                         html  
    get.TFs                                 html  
    get.diff.meth                           html  
    get.enriched.motif                      html  
    get.feature.probe                       html  
    get.pair                                html  
    get.permu                               html  
    get.tab                                 html  
    get.tabs                                html  
    get450K                                 html  
    getClinic                               html  
    getExp                                  html  
    getExpSamples                           html  
    getGeneID                               html  
    getMet                                  html  
    getMetSamples                           html  
    getRNAseq                               html  
    getRandomPairs                          html  
    getRegionNearGenes                      html  
    getSymbol                               html  
    getTCGA                                 html  
    getTF                                   html  
    getTFBindingSites                       html  
    getTFtargets                            html  
    getTSS                                  html  
    heatmapGene                             html  
    heatmapPairs                            html  
    lm_eqn                                  html  
    metBoxPlot                              html  
    motif.enrichment.plot                   html  
    preAssociationProbeFiltering            html  
    promoterMeth                            html  
    render_report                           html  
    scatter                                 html  
    scatter.plot                            html  
    schematic.plot                          html  
    summarizeTF                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ELMER)
Making 'packages.html' ... done