############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:EBImage.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings EBImage_4.47.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/EBImage.Rcheck' * using R version 4.4.0 RC (2024-04-16 r86468 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'EBImage/DESCRIPTION' ... OK * this is package 'EBImage' version '4.47.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'EBImage' can be installed ... OK * used C compiler: 'gcc.exe (GCC) 13.2.0' * used C++ compiler: 'G__~1.EXE (GCC) 13.2.0' * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for x64 is not available File 'F:/biocbuild/bbs-3.20-bioc/R/library/EBImage/libs/x64/EBImage.dll': Found '_exit', possibly from '_exit' (C) Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs nor [v]sprintf. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'test.R' Comparing 'test.Rout' to 'test.Rout.save' ...231c231,234 < checking IO for 'logo' ... FAIL --- > checking IO for 'logo' ... PASS > Warning message: > In readTIFF(x, all = all, ...) : > TIFFReadDirectory: Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples. 254c257 < checking 'display' ............................ PASS (68b260509c7ab340) 189.7 --- > checking 'display' ............................ PASS (4c9befc7a9f9f22e) 165.3 329c332 < checking 'display' ............................ PASS (2b8c45decab7535f) 174.7 --- > checking 'display' ............................ PASS (174250a6d96dee60) 150.3 390c393 < checking 'hist' ............................... PASS (54e35f2c85f2121f) 20513.55 --- > checking 'hist' ............................... PASS (e7a708b4f96f88dc) 20513.55 406c409 < checking 'display' ............................ PASS (2f08603669942058) 421.7 --- > checking 'display' ............................ PASS (dada341199e50c3d) 397.3 483c486 < checking 'display' ............................ PASS (fb5a878c739fdf0a) 357.7 --- > checking 'display' ............................ PASS (bb2b4586191eb980) 333.3 506c509 < checking 'computeFeatures' .................... PASS (e7fd48447c725f9a) 3988895 --- > checking 'computeFeatures' .................... PASS (c1ff2e62e7bb8eee) 3989786 560c563 < checking 'display' ............................ PASS (38b074e79a93b661) 330.7 --- > checking 'display' ............................ PASS (3d646d4f07d194ba) 306.3 639c642 < checking 'display' ............................ PASS (0f4b8075d5f24755) 309.7 --- > checking 'display' ............................ PASS (2fb2fcab54a4ea5a) 285.3 669c672 < checking 'filter2' ............................ PASS (ed65f114996727cf) 26149148 --- > checking 'filter2' ............................ PASS (637287a5df76a79d) 26149148 717c720 < checking 'display' ............................ PASS (ef6dce96392bbb6d) 263.7 --- > checking 'display' ............................ PASS (bc877f5317c575b2) 239.3 795c798 < checking 'display' ............................ PASS (4ca607589cc2787e) 280.7 --- > checking 'display' ............................ PASS (d28e3e75eed04056) 256.3 873c876 < checking 'display' ............................ PASS (4ca607589cc2787e) 280.7 --- > checking 'display' ............................ PASS (d28e3e75eed04056) 256.3 OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'F:/biocbuild/bbs-3.20-bioc/meat/EBImage.Rcheck/00check.log' for details.