Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2021-10-23 14:06:24 -0400 (Sat, 23 Oct 2021).

CHECK results for Dino on riesling1

To the developers/maintainers of the Dino package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Dino.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 513/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Dino 0.99.11  (landing page)
Jared Brown
Snapshot Date: 2021-10-22 14:50:11 -0400 (Fri, 22 Oct 2021)
git_url: https://git.bioconductor.org/packages/Dino
git_branch: master
git_last_commit: effd323
git_last_commit_date: 2021-06-21 14:18:26 -0400 (Mon, 21 Jun 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: Dino
Version: 0.99.11
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Dino.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Dino_0.99.11.tar.gz
StartedAt: 2021-10-23 05:50:59 -0400 (Sat, 23 Oct 2021)
EndedAt: 2021-10-23 06:01:19 -0400 (Sat, 23 Oct 2021)
EllapsedTime: 619.9 seconds
RetCode: 0
Status:   OK  
CheckDir: Dino.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Dino.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Dino_0.99.11.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/Dino.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Dino/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Dino' version '0.99.11'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Dino' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
Dino           1.92   0.03   35.03
Dino_SCE       1.72   0.06   33.33
SeuratFromDino 1.29   0.08   32.41
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
Dino           2.17   0.12   37.06
Dino_SCE       1.98   0.11   36.08
SeuratFromDino 1.47   0.08   35.95
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Dino.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Dino_0.99.11.tar.gz && rm -rf Dino.buildbin-libdir && mkdir Dino.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Dino.buildbin-libdir Dino_0.99.11.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Dino_0.99.11.zip && rm Dino_0.99.11.tar.gz Dino_0.99.11.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  320k  100  320k    0     0  1405k      0 --:--:-- --:--:-- --:--:-- 1405k

install for i386

* installing *source* package 'Dino' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Dino'
    finding HTML links ... done
    Dino                                    html  
    Dino_SCE                                html  
    SeuratFromDino                          html  
    multimodalDat                           html  
    pbmcSmall                               html  
    unimodalDat                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Dino' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Dino' as Dino_0.99.11.zip
* DONE (Dino)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'Dino' successfully unpacked and MD5 sums checked

Tests output

Dino.Rcheck/tests_i386/testthat.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Dino)
> 
> test_check("Dino")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
> 
> proc.time()
   user  system elapsed 
  11.15    0.73   73.75 

Dino.Rcheck/tests_x64/testthat.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Dino)
> 
> test_check("Dino")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
> 
> proc.time()
   user  system elapsed 
  11.89    0.84   81.15 

Example timings

Dino.Rcheck/examples_i386/Dino-Ex.timings

nameusersystemelapsed
Dino 1.92 0.0335.03
Dino_SCE 1.72 0.0633.33
SeuratFromDino 1.29 0.0832.41
multimodalDat0.010.000.02
pbmcSmall0.050.000.04
unimodalDat0.030.000.03

Dino.Rcheck/examples_x64/Dino-Ex.timings

nameusersystemelapsed
Dino 2.17 0.1237.06
Dino_SCE 1.98 0.1136.08
SeuratFromDino 1.47 0.0835.95
multimodalDat0.010.010.04
pbmcSmall0.040.000.03
unimodalDat0.000.020.02