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This page was generated on 2023-02-04 11:05:27 -0500 (Sat, 04 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" 4483
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-01-10 r83596 ucrt) -- "Unsuffered Consequences" 4249
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" 4272
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INSTALL results for DifferentialRegulation on palomino3


To the developers/maintainers of the DifferentialRegulation package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DifferentialRegulation.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 525/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DifferentialRegulation 1.3.0  (landing page)
Simone Tiberi
Snapshot Date: 2023-02-03 14:00:22 -0500 (Fri, 03 Feb 2023)
git_url: https://git.bioconductor.org/packages/DifferentialRegulation
git_branch: master
git_last_commit: 22e3ca4
git_last_commit_date: 2022-11-01 11:27:01 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DifferentialRegulation
Version: 1.3.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL DifferentialRegulation
StartedAt: 2023-02-03 15:54:02 -0500 (Fri, 03 Feb 2023)
EndedAt: 2023-02-03 15:55:04 -0500 (Fri, 03 Feb 2023)
EllapsedTime: 62.8 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL DifferentialRegulation
###
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'DifferentialRegulation' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rcpp_MCMC.cpp -o Rcpp_MCMC.o
Rcpp_MCMC.cpp: In function 'Rcpp::NumericVector Rcpp_MCMC(const unsigned int&, const unsigned int&, const unsigned int&, const unsigned int&, const Rcpp::IntegerVector&, const Rcpp::IntegerVector&, const Rcpp::ListOf<Rcpp::Vector<13> >&, const Rcpp::IntegerVector&, const unsigned int&, const unsigned int&, Rcpp::NumericMatrix&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::ListOf<Rcpp::ListOf<Rcpp::Vector<13> > >&, const Rcpp::ListOf<Rcpp::ListOf<Rcpp::Vector<14, Rcpp::PreserveStorage> > >&, const Rcpp::ListOf<Rcpp::Vector<13> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::ListOf<Rcpp::Matrix<14> > >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const bool&, const double&, const double&, const double&)':
Rcpp_MCMC.cpp:279:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const Rcpp::traits::storage_type<13>::type' {aka 'const int'} [-Wsign-compare]
  279 |         for(sample = 0; sample < n_samples_per_group[ gr ]; sample ++){
Rcpp_MCMC.cpp:144:10: warning: unused variable 'tmp_1' [-Wunused-variable]
  144 |   double tmp_1, tmp_2, tmp_3;
      |          ^~~~~
Rcpp_MCMC.cpp:144:17: warning: unused variable 'tmp_2' [-Wunused-variable]
  144 |   double tmp_1, tmp_2, tmp_3;
      |                 ^~~~~
Rcpp_MCMC.cpp:144:24: warning: unused variable 'tmp_3' [-Wunused-variable]
  144 |   double tmp_1, tmp_2, tmp_3;
      |                        ^~~~~
Rcpp_MCMC.cpp:365:10: warning: 'll_original' may be used uninitialized [-Wmaybe-uninitialized]
  365 |       ll += ll_original;
      |       ~~~^~~~~~~~~~~~~~
Rcpp_MCMC.cpp:270:21: note: 'll_original' was declared here
  270 |     double ll_prop, ll_original, ll = 0;
      |                     ^~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rcpp_MCMC_sce.cpp -o Rcpp_MCMC_sce.o
Rcpp_MCMC_sce.cpp: In function 'Rcpp::NumericVector Rcpp_MCMC_sce(const unsigned int&, const unsigned int&, const unsigned int&, const Rcpp::IntegerVector&, const Rcpp::ListOf<Rcpp::Vector<13> >&, const Rcpp::IntegerVector&, const unsigned int&, const unsigned int&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::ListOf<Rcpp::Matrix<14> > >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const bool&, const double&, const double&, const double&)':
Rcpp_MCMC_sce.cpp:234:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const Rcpp::traits::storage_type<13>::type' {aka 'const int'} [-Wsign-compare]
  234 |         for(sample = 0; sample < n_samples_per_group[ gr ]; sample ++){
Rcpp_MCMC_sce.cpp:145:10: warning: unused variable 'tmp_1' [-Wunused-variable]
  145 |   double tmp_1, tmp_2, tmp_3;
      |          ^~~~~
Rcpp_MCMC_sce.cpp:145:17: warning: unused variable 'tmp_2' [-Wunused-variable]
  145 |   double tmp_1, tmp_2, tmp_3;
      |                 ^~~~~
Rcpp_MCMC_sce.cpp:145:24: warning: unused variable 'tmp_3' [-Wunused-variable]
  145 |   double tmp_1, tmp_2, tmp_3;
      |                        ^~~~~
Rcpp_MCMC_sce.cpp:320:10: warning: 'll_original' may be used uninitialized [-Wmaybe-uninitialized]
  320 |       ll += ll_original;
      |       ~~~^~~~~~~~~~~~~~
Rcpp_MCMC_sce.cpp:227:21: note: 'll_original' was declared here
  227 |     double ll_prop, ll_original, ll = 0;
      |                     ^~~~~~~~~~~
g++ -shared -s -static-libgcc -o DifferentialRegulation.dll tmp.def RcppExports.o Rcpp_MCMC.o Rcpp_MCMC_sce.o -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-DifferentialRegulation/00new/DifferentialRegulation/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DifferentialRegulation)