Back to Multiple platform build/check report for BioC 3.19:   simplified   long
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-03-28 11:37:36 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4708
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4446
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4471
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 567/2270HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DifferentialRegulation 2.1.3  (landing page)
Simone Tiberi
Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/DifferentialRegulation
git_branch: devel
git_last_commit: 9f767e4
git_last_commit_date: 2024-01-22 10:50:02 -0400 (Mon, 22 Jan 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

INSTALL results for DifferentialRegulation on palomino3


To the developers/maintainers of the DifferentialRegulation package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DifferentialRegulation.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DifferentialRegulation
Version: 2.1.3
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL DifferentialRegulation
StartedAt: 2024-03-27 16:20:48 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 16:22:21 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 93.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL DifferentialRegulation
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'DifferentialRegulation' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
using C++17
g++  -std=gnu++17 -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/RcppArmadillo/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++17 -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/RcppArmadillo/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rcpp_MCMC.cpp -o Rcpp_MCMC.o
Rcpp_MCMC.cpp: In function 'Rcpp::NumericVector Rcpp_MCMC(const unsigned int&, const unsigned int&, const unsigned int&, const unsigned int&, const Rcpp::IntegerVector&, const Rcpp::IntegerVector&, const Rcpp::ListOf<Rcpp::Vector<13> >&, const Rcpp::IntegerVector&, const unsigned int&, const unsigned int&, Rcpp::NumericMatrix&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::NumericMatrix&, const Rcpp::ListOf<Rcpp::ListOf<Rcpp::Vector<13> > >&, const Rcpp::ListOf<Rcpp::Vector<13> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::IntegerVector&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::IntegerVector&, const double&)':
Rcpp_MCMC.cpp:305:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const Rcpp::traits::storage_type<13>::type' {aka 'const int'} [-Wsign-compare]
  305 |         for(sample = 0; sample < n_samples_per_group[ gr ]; sample ++){
Rcpp_MCMC.cpp:135:10: warning: unused variable 'tmp_1' [-Wunused-variable]
  135 |   double tmp_1, tmp_2, tmp_3;
      |          ^~~~~
Rcpp_MCMC.cpp:135:17: warning: unused variable 'tmp_2' [-Wunused-variable]
  135 |   double tmp_1, tmp_2, tmp_3;
      |                 ^~~~~
Rcpp_MCMC.cpp:135:24: warning: unused variable 'tmp_3' [-Wunused-variable]
  135 |   double tmp_1, tmp_2, tmp_3;
      |                        ^~~~~
Rcpp_MCMC.cpp:394:10: warning: 'll_original' may be used uninitialized [-Wmaybe-uninitialized]
  394 |       ll += ll_original;
      |       ~~~^~~~~~~~~~~~~~
Rcpp_MCMC.cpp:296:21: note: 'll_original' was declared here
  296 |     double ll_prop, ll_original, ll = 0;
      |                     ^~~~~~~~~~~
g++  -std=gnu++17 -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/RcppArmadillo/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rcpp_MCMC_EC_US.cpp -o Rcpp_MCMC_EC_US.o
Rcpp_MCMC_EC_US.cpp: In function 'Rcpp::NumericVector Rcpp_MCMC_EC_US(const unsigned int&, const unsigned int&, const unsigned int&, const unsigned int&, const Rcpp::IntegerVector&, const Rcpp::IntegerVector&, const Rcpp::ListOf<Rcpp::Vector<13> >&, const Rcpp::IntegerVector&, const unsigned int&, const unsigned int&, Rcpp::NumericMatrix&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::NumericMatrix&, const Rcpp::ListOf<Rcpp::ListOf<Rcpp::Vector<13> > >&, const Rcpp::ListOf<Rcpp::Vector<13> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::IntegerVector&, const Rcpp::IntegerVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const double&)':
Rcpp_MCMC_EC_US.cpp:310:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const Rcpp::traits::storage_type<13>::type' {aka 'const int'} [-Wsign-compare]
  310 |         for(sample = 0; sample < n_samples_per_group[ gr ]; sample ++){
Rcpp_MCMC_EC_US.cpp:130:10: warning: unused variable 'tmp_1' [-Wunused-variable]
  130 |   double tmp_1, tmp_2, tmp;
      |          ^~~~~
Rcpp_MCMC_EC_US.cpp:130:17: warning: unused variable 'tmp_2' [-Wunused-variable]
  130 |   double tmp_1, tmp_2, tmp;
      |                 ^~~~~
Rcpp_MCMC_EC_US.cpp:399:12: warning: 'll_original' may be used uninitialized [-Wmaybe-uninitialized]
  399 |         ll += ll_original;
      |         ~~~^~~~~~~~~~~~~~
Rcpp_MCMC_EC_US.cpp:290:21: note: 'll_original' was declared here
  290 |     double ll_prop, ll_original, ll = 0;
      |                     ^~~~~~~~~~~
g++ -shared -s -static-libgcc -o DifferentialRegulation.dll tmp.def RcppExports.o Rcpp_MCMC.o Rcpp_MCMC_EC_US.o -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-DifferentialRegulation/00new/DifferentialRegulation/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DifferentialRegulation)