############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeProViR ### ############################################################################## ############################################################################## * checking for file ‘DeProViR/DESCRIPTION’ ... OK * preparing ‘DeProViR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DeProViR_tutorial.Rmd’ using rmarkdown /Users/biocbuild/Library/Python/3.9/lib/python/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020 warnings.warn( Quitting from lines 218-246 [unnamed-chunk-2] (DeProViR_tutorial.Rmd) Error: processing vignette 'DeProViR_tutorial.Rmd' failed with diagnostics: ValueError: Unrecognized keyword arguments passed to Embedding: {'input_length': 1000, 'weights': [array([[ 0. , 0. , 0. , ..., 0. , 0. , 0. ], [-0.45433 , 1.0234 , 0.024278, ..., -0.43769 , 1.0169 , -0.26706 ], [-0.27086 , 0.044006, -0.02026 , ..., -0.4923 , 0.63687 , 0.23642 ], ..., [-0.20314 , 0.50467 , -0.25223 , ..., -0.34618 , -0.18627 , -0.31606 ], [ 0.29492 , 0.56874 , -0.20245 , ..., -0.16875 , 0.51895 , -0.50086 ], [-0.11752 , 0.97272 , -0.29021 , ..., -0.50598 , -0.28476 , -0.70045 ]])]} Run `reticulate::py_last_error()` for details. --- failed re-building ‘DeProViR_tutorial.Rmd’ SUMMARY: processing the following file failed: ‘DeProViR_tutorial.Rmd’ Error: Vignette re-building failed. Execution halted