############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data DMRcate ### ############################################################################## ############################################################################## * checking for file ‘DMRcate/DESCRIPTION’ ... OK * preparing ‘DMRcate’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘EPICv1_and_450K.Rnw’ using knitr Quitting from lines at lines 36-41 [tcells] (EPICv1_and_450K.Rnw) Error: processing vignette 'EPICv1_and_450K.Rnw' failed with diagnostics: failed to load resource name: EH1136 title: FlowSorted.Blood.EPIC: Illumina Human Methylation data from EPIC on immunomagnetic sorted adult blood cell populations reason: error in evaluating the argument 'x' in selecting a method for function 'get': error reading from connection --- failed re-building ‘EPICv1_and_450K.Rnw’ --- re-building ‘EPICv2.Rnw’ using knitr --- finished re-building ‘EPICv2.Rnw’ --- re-building ‘sequencing.Rnw’ using knitr Quitting from lines at lines 38-43 [loadeh] (sequencing.Rnw) Error: processing vignette 'sequencing.Rnw' failed with diagnostics: failed to load resource name: EH1072 title: Bisulfite sequencing data from tissue Tregs (per sample) reason: error reading from connection --- failed re-building ‘sequencing.Rnw’ SUMMARY: processing the following files failed: ‘EPICv1_and_450K.Rnw’ ‘sequencing.Rnw’ Error: Vignette re-building failed. Execution halted