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This page was generated on 2021-10-22 12:04:23 -0400 (Fri, 22 Oct 2021).

INSTALL results for DEComplexDisease on riesling1

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raw results

Package 460/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEComplexDisease 1.13.0  (landing page)
Guofeng Meng
Snapshot Date: 2021-10-21 14:50:08 -0400 (Thu, 21 Oct 2021)
git_url: https://git.bioconductor.org/packages/DEComplexDisease
git_branch: master
git_last_commit: 4e90466
git_last_commit_date: 2021-05-19 12:33:11 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DEComplexDisease
Version: 1.13.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DEComplexDisease_1.13.0.tar.gz && rm -rf DEComplexDisease.buildbin-libdir && mkdir DEComplexDisease.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEComplexDisease.buildbin-libdir DEComplexDisease_1.13.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DEComplexDisease_1.13.0.zip && rm DEComplexDisease_1.13.0.tar.gz DEComplexDisease_1.13.0.zip
StartedAt: 2021-10-21 18:07:55 -0400 (Thu, 21 Oct 2021)
EndedAt: 2021-10-21 18:11:15 -0400 (Thu, 21 Oct 2021)
EllapsedTime: 199.6 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DEComplexDisease_1.13.0.tar.gz && rm -rf DEComplexDisease.buildbin-libdir && mkdir DEComplexDisease.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEComplexDisease.buildbin-libdir DEComplexDisease_1.13.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DEComplexDisease_1.13.0.zip && rm DEComplexDisease_1.13.0.tar.gz DEComplexDisease_1.13.0.zip
###
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install for i386

* installing *source* package 'DEComplexDisease' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sig.cpp -o sig.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o DEComplexDisease.dll tmp.def RcppExports.o sig.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/DEComplexDisease.buildbin-libdir/00LOCK-DEComplexDisease/00new/DEComplexDisease/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DEComplexDisease'
    finding HTML links ... done
    Plot.cluster.module                     html  
    Plot.deg                                html  
    Plot.deg.specific                       html  
    Plot.deg.specific.test                  html  
    Plot.seed.module                        html  
    ann.er                                  html  
    bi.deg                                  html  
    cl                                      html  
    cluster.mod                             html  
    cluster.module                          html  
    deg                                     html  
    deg.spc                                 html  
    deg.specific                            html  
    exp                                     html  
    module.compare                          html  
    module.curve                            html  
    module.exact                            html  
    module.modeling                         html  
    module.overlap                          html  
    module.screen                           html  
    res.mod1                                html  
    res.mod2                                html  
    seed.mod                                html  
    seed.module                             html  
    summarize.cluster.module                html  
    summarize.deg.specific                  html  
    summarize.seed.module                   html  
** building package indices
** installing vignettes
   'decd.Rmd' 
   'vignettes.Rmd' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DEComplexDisease' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sig.cpp -o sig.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o DEComplexDisease.dll tmp.def RcppExports.o sig.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/DEComplexDisease.buildbin-libdir/DEComplexDisease/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEComplexDisease' as DEComplexDisease_1.13.0.zip
* DONE (DEComplexDisease)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'DEComplexDisease' successfully unpacked and MD5 sums checked