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This page was generated on 2024-02-28 11:36:24 -0500 (Wed, 28 Feb 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4671
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4411
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4438
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4414
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 502/2251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DAPAR 1.35.1  (landing page)
Samuel Wieczorek
Snapshot Date: 2024-02-26 14:39:26 -0500 (Mon, 26 Feb 2024)
git_url: https://git.bioconductor.org/packages/DAPAR
git_branch: devel
git_last_commit: c972945
git_last_commit_date: 2024-02-08 08:45:30 -0500 (Thu, 08 Feb 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR    OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  ERROR    OK    ERROR    ERROR  
merida1macOS 12.7.1 Monterey / x86_64  ERROR    OK    ERROR    ERROR  
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    OK    ERROR  

CHECK results for DAPAR on nebbiolo1


To the developers/maintainers of the DAPAR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DAPAR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DAPAR
Version: 1.35.1
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:DAPAR.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings DAPAR_1.35.1.tar.gz
StartedAt: 2024-02-26 21:57:02 -0500 (Mon, 26 Feb 2024)
EndedAt: 2024-02-26 21:57:06 -0500 (Mon, 26 Feb 2024)
EllapsedTime: 4.0 seconds
RetCode: 1
Status:   ERROR  
CheckDir: DAPAR.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:DAPAR.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings DAPAR_1.35.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/DAPAR.Rcheck’
* using R Under development (unstable) (2024-01-16 r85808)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘DAPAR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DAPAR’ version ‘1.35.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DAPAR’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.19-bioc/meat/DAPAR.Rcheck/00install.out’ for details.
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.19-bioc/meat/DAPAR.Rcheck/00check.log’
for details.


Installation output

DAPAR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL DAPAR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘DAPAR’ ...
** using staged installation
** R
Error in .install_package_code_files(".", instdir) : 
files in '/home/biocbuild/bbs-3.19-bioc/meat/DAPAR/R' missing from 'Collate' field:
  limmaAnalysis2.R
ERROR: unable to collate and parse R files for package ‘DAPAR’
* removing ‘/home/biocbuild/bbs-3.19-bioc/R/site-library/DAPAR’
* restoring previous ‘/home/biocbuild/bbs-3.19-bioc/R/site-library/DAPAR’

Tests output


Example timings