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This page was generated on 2022-01-19 11:07:29 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for CrispRVariants on riesling1


To the developers/maintainers of the CrispRVariants package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CrispRVariants.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 420/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CrispRVariants 1.23.0  (landing page)
Helen Lindsay
Snapshot Date: 2022-01-18 13:55:18 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/CrispRVariants
git_branch: master
git_last_commit: d8ef937
git_last_commit_date: 2021-10-26 12:24:29 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'AnnotationDbi' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: CrispRVariants
Version: 1.23.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CrispRVariants
StartedAt: 2022-01-18 15:45:13 -0500 (Tue, 18 Jan 2022)
EndedAt: 2022-01-18 15:46:24 -0500 (Tue, 18 Jan 2022)
EllapsedTime: 71.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CrispRVariants
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'CrispRVariants' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CrispRVariants'
    finding HTML links ... done
    CrisprRun-class                         html  
    CrisprSet-class                         html  
    abifToFastq                             html  
    addClipped                              html  
    addCodonFrame                           html  
    alleleLabelsHelpers                     html  
    alleles                                 html  
    alns                                    html  
    annotateGenePlot                        html  
    arrangePlots                            html  
    barplotAlleleFreqs                      html  
    collapsePairs                           html  
    consensusSeqs                           html  
    dispatchDots                            html  
    excludeFromBam                          html  
    explodeCigarOpCombs                     html  
    findChimeras                            html  
    findSNVs                                html  
    getAxisCoords                           html  
    getChimeras                             html  
    getInsertionsTable                      html  
    gol_clutch1                             html  
    indelCounts                             html  
    indelLabels                             html  
    intersperse                             html  
    makeAlignmentTilePlot                   html  
    mergeChimeras                           html  
    mergeCrisprSets                         html  
    mismatchLabels                          html  
    mutationEfficiency                      html  
    narrowAlignments                        html  
    plotAlignments                          html  
    plotChimeras                            html  
    plotFreqHeatmap                         html  
    plotVariants                            html  
    rcAlns                                  html  
    readTargetBam                           html  
    readsByPCRPrimer                        html  
    readsToTarget                           html  
    refFromAlns                             html  
    reverseCigar                            html  
    rmMultiPCRChimera                       html  
    selectAlnRegionsHelpers                 html  
    selectOps                               html  
    seqsToAln                               html  
    setDNATileColours                       html  
    setMismatchTileColours                  html  
    transformAlnsToLong                     html  
    variantCounts                           html  
    writeFastq                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CrispRVariants)
Making 'packages.html' ... done