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This page was generated on 2021-11-30 13:54:48 -0500 (Tue, 30 Nov 2021).

INSTALL results for CoreGx on riesling1

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raw results

Package 398/2068HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CoreGx 1.7.0  (landing page)
Benjamin Haibe-Kains
Snapshot Date: 2021-11-29 14:50:17 -0500 (Mon, 29 Nov 2021)
git_url: https://git.bioconductor.org/packages/CoreGx
git_branch: master
git_last_commit: b78b5a5
git_last_commit_date: 2021-10-26 12:59:39 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  NO, package depends on 'piano' which is not available

Summary

Package: CoreGx
Version: 1.7.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.15/bioc/src/contrib/CoreGx_1.7.0.tar.gz && rm -rf CoreGx.buildbin-libdir && mkdir CoreGx.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoreGx.buildbin-libdir CoreGx_1.7.0.tar.gz && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CoreGx_1.7.0.zip && rm CoreGx_1.7.0.tar.gz CoreGx_1.7.0.zip
StartedAt: 2021-11-29 18:41:45 -0500 (Mon, 29 Nov 2021)
EndedAt: 2021-11-29 18:44:48 -0500 (Mon, 29 Nov 2021)
EllapsedTime: 182.7 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.15/bioc/src/contrib/CoreGx_1.7.0.tar.gz && rm -rf CoreGx.buildbin-libdir && mkdir CoreGx.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoreGx.buildbin-libdir CoreGx_1.7.0.tar.gz && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CoreGx_1.7.0.zip && rm CoreGx_1.7.0.tar.gz CoreGx_1.7.0.zip
###
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                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1215k  100 1215k    0     0  3266k      0 --:--:-- --:--:-- --:--:-- 3266k
only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'CoreGx' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Registered S3 method overwritten by 'ggplot2':
  method        from
  print.element sets
Creating a generic function for 'colnames' from package 'base' in package 'CoreGx'
Creating a generic function for 'rownames' from package 'base' in package 'CoreGx'
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CoreGx'
    finding HTML links ... done
    CoreSet-accessors                       html  
    CoreSet-class                           html  
    CoreSet-utils                           html  
    CoreSet                                 html  
    CoreSet2                                html  
    Create                                  html  
    DataMapper-accessors                    html  
    DataMapper-class                        html  
    LongTable-accessors                     html  
    LongTable-class                         html  
    LongTable                               html  
    LongTableDataMapper-accessors           html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/CoreGx.buildbin-libdir/00LOCK-CoreGx/00new/CoreGx/help/assayMap+2CLongTableDataMapper+2CList-method.html
    LongTableDataMapper-class               html  
    LongTableDataMapper                     html  
    TREDataMapper-class                     html  
    TREDataMapper                           html  
    TreatmentResponseExperiment-class       html  
    TreatmentResponseExperiment             html  
    amcc                                    html  
    as                                      html  
    as.long.table                           html  
    assayCols                               html  
    buildLongTable                          html  
    callingWaterfall                        html  
    cash-LongTable-method                   html  
    cash-set-LongTable-method               html  
    checkColumnCardinality                  html  
    checkCsetStructure                      html  
    clevelandSmall_cSet                     html  
    colIDs                                  html  
    colMeta                                 html  
    connectivityScore                       html  
    cosinePerm                              html  
    dot-                                    html  
    dot-assayToBumpyMatrix                  html  
    dot-convertCSetMolecularProfilesToSE    html  
    dot-distancePointLine                   html  
    dot-distancePointSegment                html  
    dot-intersectList                       html  
    dot-longTableToSummarizedExperiment     html  
    dot-sensitivityToLongTable              html  
    dot-symSetDiffList                      html  
    dot-unionList                           html  
    drugSensitivitySig                      html  
    exampleDataMapper                       html  
    getIntern                               html  
    guessMapping-LongTableDataMapper-method
                                            html  
    guessMapping                            html  
    gwc                                     html  
    idCols-LongTable-method                 html  
    idCols                                  html  
    is.items                                html  
    lapply-MultiAssayExperiment-method      html  
    list_or_LongTable-class                 html  
    mcc                                     html  
    merckLongTable                          html  
    metaConstruct                           html  
    metadata-LongTable-method               html  
    metadata-set-LongTable-method           html  
    reindex-LongTable-method                html  
    reindex                                 html  
    rowIDs                                  html  
    rowMeta                                 html  
    sensitivityInfo-set                     html  
    sensitivityInfo                         html  
    sensitivityMeasures-set                 html  
    sensitivityMeasures                     html  
    sensitivityProfiles-set                 html  
    sensitivityProfiles                     html  
    sensitivityRaw-set                      html  
    sensitivityRaw                          html  
    sensitivitySlotToLongTable              html  
    show-CoreSet-method                     html  
    show-LongTable-method                   html  
    showSigAnnot                            html  
    sub-LongTable-ANY-ANY-ANY-method        html  
    sub-subset-LongTable-ANY-ANY-method     html  
    subset-LongTable-method                 html  
    subsetTo                                html  
    summarizeMolecularProfiles              html  
    summarizeSensitivityProfiles            html  
    updateCellId                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'CoreGx' as CoreGx_1.7.0.zip
* DONE (CoreGx)
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
package 'CoreGx' successfully unpacked and MD5 sums checked