This page was generated on 2024-03-28 11:37:30 -0400 (Thu, 28 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences"
| 4708 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences"
| 4446 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences"
| 4471 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences"
| 4426 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
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### Running command:
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### chmod a+r CoGAPS -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CoGAPS
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* checking for file 'CoGAPS/DESCRIPTION' ... OK
* preparing 'CoGAPS':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CoGAPS.Rmd' using rmarkdown
Data Model: Dense, Normal
Sampler Type: Sequential
Loading Data...Done! (00:00:00)
-- Equilibration Phase --
10000 of 50000, Atoms: 68(A), 28(P), ChiSq: 328, Time: 00:00:00 / 00:00:00
20000 of 50000, Atoms: 89(A), 33(P), ChiSq: 137, Time: 00:00:00 / 00:00:00
30000 of 50000, Atoms: 83(A), 38(P), ChiSq: 116, Time: 00:00:01 / 00:00:03
40000 of 50000, Atoms: 88(A), 33(P), ChiSq: 115, Time: 00:00:01 / 00:00:02
50000 of 50000, Atoms: 88(A), 42(P), ChiSq: 106, Time: 00:00:01 / 00:00:02
-- Sampling Phase --
10000 of 50000, Atoms: 86(A), 43(P), ChiSq: 94, Time: 00:00:02 / 00:00:03
20000 of 50000, Atoms: 84(A), 39(P), ChiSq: 88, Time: 00:00:02 / 00:00:02
30000 of 50000, Atoms: 86(A), 37(P), ChiSq: 115, Time: 00:00:02 / 00:00:02
40000 of 50000, Atoms: 83(A), 37(P), ChiSq: 144, Time: 00:00:03 / 00:00:03
50000 of 50000, Atoms: 85(A), 30(P), ChiSq: 112, Time: 00:00:03 / 00:00:03
Quitting from lines 428-429 [get hallmarks] (CoGAPS.Rmd)
Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics:
Unable to query any Ensembl site
--- failed re-building 'CoGAPS.Rmd'
SUMMARY: processing the following file failed:
'CoGAPS.Rmd'
Error: Vignette re-building failed.
Execution halted