Multiple platform build/check report for BioC 3.19 - BUILD results for CoGAPS on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences"	4708
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences"	4446
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences"	4471
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences"	4426
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the CoGAPS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoGAPS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS
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* checking for file ‘CoGAPS/DESCRIPTION’ ... OK
* preparing ‘CoGAPS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CoGAPS.Rmd’ using rmarkdown
Data Model: Dense, Normal
Sampler Type: Sequential
Loading Data...Done! (00:00:00)
-- Equilibration Phase --
10000 of 50000, Atoms: 68(A), 32(P), ChiSq: 330, Time: 00:00:00 / 00:00:00
20000 of 50000, Atoms: 73(A), 38(P), ChiSq: 198, Time: 00:00:00 / 00:00:00
30000 of 50000, Atoms: 81(A), 35(P), ChiSq: 125, Time: 00:00:00 / 00:00:00
40000 of 50000, Atoms: 75(A), 50(P), ChiSq: 130, Time: 00:00:01 / 00:00:02
50000 of 50000, Atoms: 84(A), 42(P), ChiSq: 145, Time: 00:00:01 / 00:00:02
-- Sampling Phase --
10000 of 50000, Atoms: 78(A), 42(P), ChiSq: 110, Time: 00:00:02 / 00:00:03
20000 of 50000, Atoms: 74(A), 42(P), ChiSq: 149, Time: 00:00:02 / 00:00:02
30000 of 50000, Atoms: 72(A), 41(P), ChiSq: 100, Time: 00:00:02 / 00:00:02
40000 of 50000, Atoms: 76(A), 40(P), ChiSq: 147, Time: 00:00:03 / 00:00:03
50000 of 50000, Atoms: 76(A), 45(P), ChiSq: 130, Time: 00:00:03 / 00:00:03

Quitting from lines 428-429 [get hallmarks] (CoGAPS.Rmd)
Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics:
Unable to query any Ensembl site
--- failed re-building ‘CoGAPS.Rmd’

SUMMARY: processing the following file failed:
  ‘CoGAPS.Rmd’

Error: Vignette re-building failed.
Execution halted

BUILD results for CoGAPS on lconway

Summary

Command output