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This page was generated on 2021-10-23 14:06:21 -0400 (Sat, 23 Oct 2021).

BUILD BIN results for ChromSCape on riesling1

To the developers/maintainers of the ChromSCape package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChromSCape.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 313/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChromSCape 1.3.22  (landing page)
Pacome Prompsy
Snapshot Date: 2021-10-22 14:50:11 -0400 (Fri, 22 Oct 2021)
git_url: https://git.bioconductor.org/packages/ChromSCape
git_branch: master
git_last_commit: 8f4b09e
git_last_commit_date: 2021-09-28 04:52:10 -0400 (Tue, 28 Sep 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ChromSCape
Version: 1.3.22
Command: rm -rf ChromSCape.buildbin-libdir && mkdir ChromSCape.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChromSCape.buildbin-libdir ChromSCape_1.3.22.tar.gz
StartedAt: 2021-10-23 10:04:31 -0400 (Sat, 23 Oct 2021)
EndedAt: 2021-10-23 10:08:35 -0400 (Sat, 23 Oct 2021)
EllapsedTime: 244.1 seconds
RetCode: 0
Status:   OK  
PackageFile: ChromSCape_1.3.22.zip
PackageFileSize: 6.411 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ChromSCape.buildbin-libdir && mkdir ChromSCape.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChromSCape.buildbin-libdir ChromSCape_1.3.22.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'ChromSCape' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c as_dist.cpp -o as_dist.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ChromSCape.dll tmp.def RcppExports.o as_dist.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/ChromSCape.buildbin-libdir/00LOCK-ChromSCape/00new/ChromSCape/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ChromSCape'
    finding HTML links ... done
    CompareWilcox                           html  
    CompareedgeRGLM                         html  
    DA_custom                               html  
    DA_one_vs_rest_fun                      html  
    DA_pairwise                             html  
    H1proportion                            html  
    annotToCol2                             html  
    annotation_from_merged_peaks            html  
    anocol_binary                           html  
    anocol_categorical                      html  
    bams_to_matrix_indexes                  html  
    beds_to_matrix_indexes                  html  
    calculate_CNA                           html  
    calculate_cyto_mat                      html  
    calculate_gain_or_loss                  html  
    calculate_logRatio_CNA                  html  
    call_macs2_merge_peaks                  html  
    changeRange                             html  
    check_correct_datamatrix                html  
    choose_cluster_scExp                    html  
    choose_perplexity                       html  
    col2hex                                 html  
    colors_scExp                            html  
    combine_datamatrix                      html  
    combine_enrichmentTests                 html  
    concatenate_scBed_into_clusters         html  
    consensus_clustering_scExp              html  
    correlation_and_hierarchical_clust_scExp
                                            html  
    count_coverage                          html  
    create_project_folder                   html  
    create_sample_name_mat                  html  
    create_scDataset_raw                    html  
    create_scExp                            html  
    define_feature                          html  
    detect_samples                          html  
    differential_analysis_scExp             html  
    distPearson                             html  
    enrichmentTest                          html  
    exclude_features_scExp                  html  
    feature_annotation_scExp                html  
    filter_correlated_cell_scExp            html  
    filter_genes_with_refined_peak_annotation
                                            html  
    filter_scExp                            html  
    find_top_features                       html  
    gene_set_enrichment_analysis_scExp      html  
    generate_analysis                       html  
    generate_count_matrix                   html  
    generate_coverage_tracks                html  
    generate_feature_names                  html  
    getExperimentNames                      html  
    getMainExperiment                       html  
    get_color_dataframe_from_input          html  
    get_cyto_features                       html  
    get_genomic_coordinates                 html  
    get_most_variable_cyto                  html  
    gg_fill_hue                             html  
    groupMat                                html  
    has_genomic_coordinates                 html  
    hclustAnnotHeatmapPlot                  html  
    hg38.GeneTSS                            html  
    hg38.chromosomes                        html  
    hg38.cytoBand                           html  
    imageCol                                html  
    import_count_input_files                html  
    import_scExp                            html  
    index_peaks_barcodes_to_matrix_indexes
                                            html  
    inter_correlation_scExp                 html  
    intra_correlation_scExp                 html  
    launchApp                               html  
    load_MSIGdb                             html  
    merge_MACS2_peaks                       html  
    mm10.GeneTSS                            html  
    mm10.chromosomes                        html  
    mm10.cytoBand                           html  
    normalize_scExp                         html  
    num_cell_after_QC_filt_scExp            html  
    num_cell_after_cor_filt_scExp           html  
    num_cell_before_cor_filt_scExp          html  
    num_cell_in_cluster_scExp               html  
    num_cell_scExp                          html  
    pca_irlba_for_sparseMatrix              html  
    peaks_to_bins                           html  
    plot_cluster_consensus_scExp            html  
    plot_coverage_BigWig                    html  
    plot_differential_H1_scExp              html  
    plot_differential_summary_scExp         html  
    plot_differential_volcano_scExp         html  
    plot_distribution_scExp                 html  
    plot_gain_or_loss_barplots              html  
    plot_heatmap_scExp                      html  
    plot_inter_correlation_scExp            html  
    plot_intra_correlation_scExp            html  
    plot_most_contributing_features         html  
    plot_pie_most_contributing_chr          html  
    plot_reduced_dim_scExp                  html  
    plot_reduced_dim_scExp_CNA              html  
    preprocess_CPM                          html  
    preprocess_RPKM                         html  
    preprocess_TFIDF                        html  
    preprocess_TPM                          html  
    preprocess_feature_size_only            html  
    raw_counts_to_sparse_matrix             html  
    rawfile_ToBigWig                        html  
    read_count_mat_with_separated_chr_start_end
                                            html  
    read_sparse_matrix                      html  
    reduce_dim_batch_correction             html  
    reduce_dims_scExp                       html  
    remove_chr_M_fun                        html  
    remove_non_canonical_fun                html  
    results_enrichmentTest                  html  
    retrieve_top_bot_features_pca           html  
    run_pairwise_tests                      html  
    run_tsne_scExp                          html  
    scExp                                   html  
    separate_BAM_into_clusters              html  
    separator_count_mat                     html  
    smoothBin                               html  
    subsample_scExp                         html  
    subset_bam_call_peaks                   html  
    swapAltExp_sameColData                  html  
    table_enriched_genes_scExp              html  
    warning_DA                              html  
    warning_filter_correlated_cell_scExp    html  
    warning_plot_reduced_dim_scExp          html  
    warning_raw_counts_to_sparse_matrix     html  
    wrapper_Signac_FeatureMatrix            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ChromSCape' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c as_dist.cpp -o as_dist.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ChromSCape.dll tmp.def RcppExports.o as_dist.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/ChromSCape.buildbin-libdir/ChromSCape/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChromSCape' as ChromSCape_1.3.22.zip
* DONE (ChromSCape)