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This page was generated on 2022-12-05 11:05:30 -0500 (Mon, 05 Dec 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2022-11-30 r83393) -- "Unsuffered Consequences" 4277
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-11-30 r83393 ucrt) -- "Unsuffered Consequences" 4193
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-11-30 r83393) -- "Unsuffered Consequences" 4236
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for ChIPComp on nebbiolo1


To the developers/maintainers of the ChIPComp package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChIPComp.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 304/2155HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPComp 1.29.0  (landing page)
Li Chen
Snapshot Date: 2022-12-04 14:00:12 -0500 (Sun, 04 Dec 2022)
git_url: https://git.bioconductor.org/packages/ChIPComp
git_branch: master
git_last_commit: d65bdfa
git_last_commit_date: 2022-11-01 11:12:04 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: ChIPComp
Version: 1.29.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChIPComp
StartedAt: 2022-12-04 16:04:44 -0500 (Sun, 04 Dec 2022)
EndedAt: 2022-12-04 16:05:49 -0500 (Sun, 04 Dec 2022)
EllapsedTime: 65.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChIPComp
###
##############################################################################
##############################################################################


* checking for file ‘ChIPComp/DESCRIPTION’ ... OK
* preparing ‘ChIPComp’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ChIPComp.Rnw’ using Sweave
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:base’:

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: rtracklayer
Making peak list......

Making ip counts......
Making control counts......

Error: processing vignette 'ChIPComp.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'ChIPComp.tex' failed.
LaTeX errors:
! Missing $ inserted.
<inserted text> 
                $
l.152   \item Time zone America/New_
                                    York
! Emergency stop.
<inserted text> 
                $
l.152   \item Time zone America/New_
                                    York
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘ChIPComp.Rnw’

SUMMARY: processing the following file failed:
  ‘ChIPComp.Rnw’

Error: Vignette re-building failed.
Execution halted