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This page was generated on 2022-06-29 11:04:57 -0400 (Wed, 29 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4159
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for CellBarcode on lconway


To the developers/maintainers of the CellBarcode package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellBarcode.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 267/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellBarcode 1.3.0  (landing page)
Wenjie Sun
Snapshot Date: 2022-06-28 14:00:02 -0400 (Tue, 28 Jun 2022)
git_url: https://git.bioconductor.org/packages/CellBarcode
git_branch: master
git_last_commit: 0ec7508
git_last_commit_date: 2022-04-26 12:19:50 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CellBarcode
Version: 1.3.0
Command: rm -rf CellBarcode.buildbin-libdir && mkdir CellBarcode.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CellBarcode_1.3.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CellBarcode.buildbin-libdir
StartedAt: 2022-06-29 00:07:12 -0400 (Wed, 29 Jun 2022)
EndedAt: 2022-06-29 00:08:11 -0400 (Wed, 29 Jun 2022)
EllapsedTime: 58.9 seconds
RetCode: 0
Status:   OK  
PackageFile: CellBarcode_1.3.0.tgz
PackageFileSize: 3.047 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CellBarcode.buildbin-libdir && mkdir CellBarcode.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CellBarcode_1.3.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CellBarcode.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CellBarcode.buildbin-libdir CellBarcode_1.3.0.tar.gz'
>>>>>>> 

* installing *source* package ‘CellBarcode’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c lib.cpp -o lib.o
lib.cpp:159:18: warning: variable 'flag_is_connetcted' set but not used [-Wunused-but-set-variable]
            bool flag_is_connetcted = false;
                 ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CellBarcode.so RcppExports.o lib.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.16-bioc/meat/CellBarcode.buildbin-libdir/00LOCK-CellBarcode/00new/CellBarcode/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellBarcode)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CellBarcode.buildbin-libdir/CellBarcode/libs/CellBarcode.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "CellBarcode.buildbin-libdir/CellBarcode/libs/CellBarcode.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "CellBarcode.buildbin-libdir/CellBarcode/libs/CellBarcode.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "CellBarcode.buildbin-libdir/CellBarcode/libs/CellBarcode.so"