Back to Multiple platform build/check report for BioC 3.15
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-01-21 11:07:15 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for CNVfilteR on riesling1


To the developers/maintainers of the CNVfilteR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNVfilteR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 353/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVfilteR 1.9.0  (landing page)
Jose Marcos Moreno-Cabrera
Snapshot Date: 2022-01-20 13:55:17 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/CNVfilteR
git_branch: master
git_last_commit: f2cc045
git_last_commit_date: 2021-10-26 12:54:56 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'IRanges' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CNVfilteR
Version: 1.9.0
Command: rm -rf CNVfilteR.buildbin-libdir && mkdir CNVfilteR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=CNVfilteR.buildbin-libdir CNVfilteR_1.9.0.tar.gz
StartedAt: 2022-01-20 20:46:54 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 20:48:01 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 67.0 seconds
RetCode: 0
Status:   OK  
PackageFile: CNVfilteR_1.9.0.zip
PackageFileSize: 644.9 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CNVfilteR.buildbin-libdir && mkdir CNVfilteR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=CNVfilteR.buildbin-libdir CNVfilteR_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'CNVfilteR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CNVfilteR'
    finding HTML links ... done
    auxAddCNcolumn                          html  
    auxGetVcfSource                         html  
    auxProcessVariants                      html  
    filterCNVs                              html  
    getVariantScore                         html  
    loadCNVcalls                            html  
    loadSNPsFromVCF                         html  
    loadVCFs                                html  
    plotAllCNVs                             html  
    plotScoringModel                        html  
    plotVariantsForCNV                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'CNVfilteR' as CNVfilteR_1.9.0.zip
* DONE (CNVfilteR)