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This page was generated on 2024-03-01 11:37:24 -0500 (Fri, 01 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4676
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4414
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4441
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4417
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 286/2251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CCPROMISE 1.29.0  (landing page)
Xueyuan Cao
Snapshot Date: 2024-02-28 14:00:14 -0500 (Wed, 28 Feb 2024)
git_url: https://git.bioconductor.org/packages/CCPROMISE
git_branch: devel
git_last_commit: 1d94c57
git_last_commit_date: 2023-10-24 10:54:01 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  

BUILD results for CCPROMISE on palomino3


To the developers/maintainers of the CCPROMISE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CCPROMISE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CCPROMISE
Version: 1.29.0
Command: chmod a+r CCPROMISE -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CCPROMISE
StartedAt: 2024-02-28 19:00:55 -0500 (Wed, 28 Feb 2024)
EndedAt: 2024-02-28 19:01:50 -0500 (Wed, 28 Feb 2024)
EllapsedTime: 54.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r CCPROMISE -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CCPROMISE
###
##############################################################################
##############################################################################


* checking for file 'CCPROMISE/DESCRIPTION' ... OK
* preparing 'CCPROMISE':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CCPROMISE.Rnw' using Sweave
Loading required package: CCP
Loading required package: PROMISE
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, aperm, append, as.data.frame,
    basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match,
    mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff,
    table, tapply, union, unique, unsplit, which.max,
    which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view
    with 'browseVignettes()'. To cite Bioconductor,
    see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: GSEABase
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: XML
Loading required package: graph

Attaching package: 'graph'

The following object is masked from 'package:XML':

    addNode

No. of Matching array ids in endpt data and array data: 151
Computing Stats for Observed Data: Wed Feb 28 19:01:33 2024
Computing gene-specific statistics: Wed Feb 28 19:01:33 2024
Set seed: seed =  13
Finished at:  Wed Feb 28 19:01:33 2024
No. of Matching array ids in endpt data and array data: 151
Computing Stats for Observed Data: Wed Feb 28 19:01:35 2024
Computing gene-specific statistics: Wed Feb 28 19:01:35 2024
Set seed: seed =  13
Finished at:  Wed Feb 28 19:01:38 2024
Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1033
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "CCPROMISE.tex" ' had status 1033
Error: processing vignette 'CCPROMISE.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'CCPROMISE.pdf' for vignette with name 'CCPROMISE' and engine 'utils::Sweave'. The following files exist in working directory 'F:\biocbuild\bbs-3.19-bioc\tmpdir\RtmpEPFzdJ\Rbuild3010636d44c9\CCPROMISE\vignettes': 'CCPROMISE-concordance.tex' (194 bytes), 'CCPROMISE.Rnw' (4706 bytes), 'CCPROMISE.tex' (10476 bytes)
--- failed re-building 'CCPROMISE.Rnw'

SUMMARY: processing the following file failed:
  'CCPROMISE.Rnw'

Error: Vignette re-building failed.
Execution halted