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This page was generated on 2022-01-15 11:07:10 -0500 (Sat, 15 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4160
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4055
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3997
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4114
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for CAGEfightR on riesling1


To the developers/maintainers of the CAGEfightR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CAGEfightR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 232/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CAGEfightR 1.15.1  (landing page)
Malte Thodberg
Snapshot Date: 2022-01-14 13:55:18 -0500 (Fri, 14 Jan 2022)
git_url: https://git.bioconductor.org/packages/CAGEfightR
git_branch: master
git_last_commit: aead2e0
git_last_commit_date: 2021-11-20 23:19:47 -0500 (Sat, 20 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CAGEfightR
Version: 1.15.1
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CAGEfightR
StartedAt: 2022-01-14 16:16:20 -0500 (Fri, 14 Jan 2022)
EndedAt: 2022-01-14 16:17:05 -0500 (Fri, 14 Jan 2022)
EllapsedTime: 45.3 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CAGEfightR
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'CAGEfightR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CAGEfightR'
    finding HTML links ... done
    assignGeneID                            html  
    assignMissingID                         html  
    assignTxID                              html  
    assignTxType                            html  
    balanceBC                               html  
    balanceD                                html  
    bwCommonGenome                          html  
    bwGenomeCompatibility                   html  
    bwValid                                 html  
    calcBidirectionality                    html  
    calcComposition                         html  
    calcPooled                              html  
    calcShape                               html  
    calcSupport                             html  
    calcTPM                                 html  
    calcTotalTags                           html  
    checkCTSSs                              html  
    checkPeaked                             html  
    checkPooled                             html  
    clusterBidirectionally                  html  
    clusterUnidirectionally                 html  
    combineClusters                         html  
    convertBAM2BigWig                       html  
    convertBED2BigWig                       html  
    convertGRanges2GPos                     html  
    exampleDesign                           html  
    findLinks                               html  
    findStretches                           html  
    quantifyCTSSs                           html  
    quantifyCTSSs2                          html  
    quantifyClusters                        html  
    quantifyGenes                           html  
    quickEnhancers                          html  
    quickGenes                              html  
    quickTSSs                               html  
    shapeEntropy                            html  
    shapeIQR                                html  
    shapeMean                               html  
    shapeMultimodality                      html  
    subsetByBidirectionality                html  
    subsetByComposition                     html  
    subsetBySupport                         html  
    swapRanges                              html  
    swapScores                              html  
    trackBalance                            html  
    trackCTSS                               html  
    trackClusters                           html  
    trackLinks                              html  
    trimToPeak                              html  
    trimToPercentiles                       html  
    tuneTagClustering                       html  
    utilsAggregateRows                      html  
    utilsDeStrand                           html  
    utilsScoreOverlaps                      html  
    utilsSimplifyTxDb                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CAGEfightR)
Making 'packages.html' ... done