Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-24 11:06:52 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for BiocOncoTK on riesling1


To the developers/maintainers of the BiocOncoTK package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocOncoTK.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 160/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocOncoTK 1.15.1  (landing page)
VJ Carey
Snapshot Date: 2022-01-23 13:55:15 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/BiocOncoTK
git_branch: master
git_last_commit: d1fad8e
git_last_commit_date: 2022-01-14 11:42:50 -0500 (Fri, 14 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'ComplexHeatmap' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: BiocOncoTK
Version: 1.15.1
Command: rm -rf BiocOncoTK.buildbin-libdir && mkdir BiocOncoTK.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=BiocOncoTK.buildbin-libdir BiocOncoTK_1.15.1.tar.gz
StartedAt: 2022-01-23 20:43:47 -0500 (Sun, 23 Jan 2022)
EndedAt: 2022-01-23 20:44:50 -0500 (Sun, 23 Jan 2022)
EllapsedTime: 62.4 seconds
RetCode: 0
Status:   OK  
PackageFile: BiocOncoTK_1.15.1.zip
PackageFileSize: 8.259 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BiocOncoTK.buildbin-libdir && mkdir BiocOncoTK.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=BiocOncoTK.buildbin-libdir BiocOncoTK_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'BiocOncoTK' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'BiocOncoTK'
** help
*** installing help indices
  converting help for package 'BiocOncoTK'
    finding HTML links ... done
    CCLE_DRUG_BROAD                         html  
    MSIsensor.10k                           html  
    TcgaMutCounts                           html  
    TcgaNIndWithAnyMut                      html  
    add_sym                                 html  
    annotTabs                               html  
    bindMSI                                 html  
    bipg_tests                              html  
    brcaMAE                                 html  
    buildPancanSE                           html  
    cell_70138                              html  
    clueDemos                               html  
    clueServiceNames                        html  
    darmGBMcls                              html  
    dingMSI                                 html  
    featIDMapper                            html  
    fireMSI                                 html  
    get_plates                              html  
    ggFeatDens                              html  
    ggFeatureSegs                           html  
    ggMutDens                               html  
    icd10_c                                 html  
    k23sig                                  html  
    kang_DNArepair                          html  
    loadPatel                               html  
    log10pl1                                html  
    map_tcga_ncit                           html  
    mc3toGR                                 html  
    molpo_3utr                              html  
    molpo_5utr                              html  
    molpo_CDS                               html  
    molpo_WGS                               html  
    multiviz                                html  
    oncoPrintISB                            html  
    pancan.clin.varnames                    html  
    pancan_BQ                               html  
    finding level-2 HTML links ... done

    pancan_app                              html  
    pancan_clinicalTabVarnames              html  
    pancan_longname                         html  
    pancan_sampTypeMap                      html  
    pancan_tabulate                         html  
    patient_to_tumor_code                   html  
    pertClasses                             html  
    pert_70138                              html  
    query_clue                              html  
    reexports                               html  
    replaceRownames                         html  
    small_msi                               html  
    tumNorSet                               html  
    utils                                   html  
    viz_msi_raw                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'BiocOncoTK'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'BiocOncoTK'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'BiocOncoTK' as BiocOncoTK_1.15.1.zip
* DONE (BiocOncoTK)