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INSTALL report for BiocIO on riesling1

This page was generated on 2021-01-24 12:35:03 -0500 (Sun, 24 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE BiocIO PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 160/1932HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocIO 1.1.2
Bioconductor Package Maintainer
Snapshot Date: 2021-01-23 14:40:18 -0500 (Sat, 23 Jan 2021)
URL: https://git.bioconductor.org/packages/BiocIO
Branch: master
Last Commit: e456aae
Last Changed Date: 2020-12-05 05:05:53 -0500 (Sat, 05 Dec 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  WARNINGS  OK 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocIO
Version: 1.1.2
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/bioc/src/contrib/BiocIO_1.1.2.tar.gz && rm -rf BiocIO.buildbin-libdir && mkdir BiocIO.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocIO.buildbin-libdir BiocIO_1.1.2.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL BiocIO_1.1.2.zip && rm BiocIO_1.1.2.tar.gz BiocIO_1.1.2.zip
StartedAt: 2021-01-23 16:53:15 -0500 (Sat, 23 Jan 2021)
EndedAt: 2021-01-23 16:54:26 -0500 (Sat, 23 Jan 2021)
EllapsedTime: 71.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/bioc/src/contrib/BiocIO_1.1.2.tar.gz && rm -rf BiocIO.buildbin-libdir && mkdir BiocIO.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocIO.buildbin-libdir BiocIO_1.1.2.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL BiocIO_1.1.2.zip && rm BiocIO_1.1.2.tar.gz BiocIO_1.1.2.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  8755  100  8755    0     0   328k      0 --:--:-- --:--:-- --:--:--  328k

install for i386

* installing *source* package 'BiocIO' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiocIO'
    finding HTML links ... done
    BiocFile-class                          html  
REDIRECT:topic	 class:BiocFile -> BiocFile-class.html [ FAIL ]
REDIRECT:topic	 BiocFile-class -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 class:CompressedFile -> BiocFile-class.html [ FAIL ]
REDIRECT:topic	 CompressedFile-class -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 BiocFileList-class -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 path -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 path,BiocFile-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 resource -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 resource<- -> BiocFile-class.html [ FAIL ]
REDIRECT:topic	 fileFormat -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 fileFormat,BiocFile-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 fileFormat,CompressedFile-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 fileFormat,character-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 BiocFileList -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 show,BiocFile-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 FileForFormat -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 bestFileFormat -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 bestFileFormat,GRangesList-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 bestFileFormat,GenomicRanges-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 bestFileFormat,IntegerRangesList-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 bestFileFormat,RleList-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 decompress -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 decompress,ANY-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 decompress,CompressedFile-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 decompress,GZFile-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 decompress,character-method -> BiocFile-class.html [ SUCCESS ]
REDIRECT:topic	 as.character,BiocFile-method -> BiocFile-class.html [ SUCCESS ]
Rd warning: cannot open file 'D:/biocbuild/bbs-3.13-bioc/meat/BiocIO.buildbin-libdir/00LOCK-BiocIO/00new/BiocIO/help/resource<-.html': Invalid argument
    export                                  html  
REDIRECT:topic	 export -> export.html [ SUCCESS ]
REDIRECT:topic	 export,ANY,connection,character-method -> export.html [ SUCCESS ]
REDIRECT:topic	 export,ANY,connection,missing-method -> export.html [ SUCCESS ]
REDIRECT:topic	 export,ANY,CompressedFile,missing-method -> export.html [ SUCCESS ]
REDIRECT:topic	 export,ANY,missing,character-method -> export.html [ SUCCESS ]
REDIRECT:topic	 export,ANY,character,missing-method -> export.html [ SUCCESS ]
REDIRECT:topic	 export,ANY,character,character-method -> export.html [ SUCCESS ]
REDIRECT:topic	 import -> export.html [ SUCCESS ]
REDIRECT:topic	 import,connection,character,ANY-method -> export.html [ SUCCESS ]
REDIRECT:topic	 import,connection,missing,ANY-method -> export.html [ SUCCESS ]
REDIRECT:topic	 import,CompressedFile,missing,ANY-method -> export.html [ SUCCESS ]
REDIRECT:topic	 import,character,missing,ANY-method -> export.html [ SUCCESS ]
REDIRECT:topic	 import,character,character,ANY-method -> export.html [ SUCCESS ]
REDIRECT:topic	 import,missing,ANY,character-method -> export.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BiocIO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocIO' as BiocIO_1.1.2.zip
* DONE (BiocIO)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'BiocIO' successfully unpacked and MD5 sums checked