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This page was generated on 2021-10-23 14:06:19 -0400 (Sat, 23 Oct 2021).

BUILD BIN results for BayesSpace on riesling1

To the developers/maintainers of the BayesSpace package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BayesSpace.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 125/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BayesSpace 1.3.1  (landing page)
Matt Stone
Snapshot Date: 2021-10-22 14:50:11 -0400 (Fri, 22 Oct 2021)
git_url: https://git.bioconductor.org/packages/BayesSpace
git_branch: master
git_last_commit: f7aeef9
git_last_commit_date: 2021-10-06 10:38:23 -0400 (Wed, 06 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: BayesSpace
Version: 1.3.1
Command: rm -rf BayesSpace.buildbin-libdir && mkdir BayesSpace.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BayesSpace.buildbin-libdir BayesSpace_1.3.1.tar.gz
StartedAt: 2021-10-23 09:43:01 -0400 (Sat, 23 Oct 2021)
EndedAt: 2021-10-23 09:47:12 -0400 (Sat, 23 Oct 2021)
EllapsedTime: 251.2 seconds
RetCode: 0
Status:   OK  
PackageFile: BayesSpace_1.3.1.zip
PackageFileSize: 2.08 MiB

Command output

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###
### Running command:
###
###   rm -rf BayesSpace.buildbin-libdir && mkdir BayesSpace.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BayesSpace.buildbin-libdir BayesSpace_1.3.1.tar.gz
###
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install for i386

* installing *source* package 'BayesSpace' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppDist/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppDist/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cluster.cpp -o cluster.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o BayesSpace.dll tmp.def RcppExports.o cluster.o -fopenmp -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lRlapack -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/BayesSpace.buildbin-libdir/00LOCK-BayesSpace/00new/BayesSpace/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BayesSpace'
    finding HTML links ... done
    BayesSpace                              html  
    Mode                                    html  
    cluster                                 html  
    clusterPlot                             html  
    deconvolve                              html  
    dot-adjust_hex_centers                  html  
    dot-bsData                              html  
    dot-clean_chain                         html  
    dot-compute_interspot_distances         html  
    dot-find_neighbors                      html  
    dot-flatten_matrix_list                 html  
    dot-infer_param_dims                    html  
    dot-init_cluster                        html  
    dot-make_hex_spots                      html  
    dot-make_index_names                    html  
    dot-make_spot_vertices                  html  
    dot-make_square_spots                   html  
    dot-make_subspot_coldata                html  
    dot-make_subspot_offsets                html  
    dot-make_triangle_subspots              html  
    dot-make_vertices                       html  
    dot-prepare_inputs                      html  
    dot-read_chain                          html  
    dot-select_spot_positions               html  
    dot-select_subspot_positions            html  
    enhanceFeatures                         html  
    exampleSCE                              html  
    featurePlot                             html  
    find_neighbors                          html  
    getRDS                                  html  
    mcmcChain                               html  
    qTune                                   html  
    readVisium                              html  
    spatialCluster                          html  
    spatialEnhance                          html  
    spatialPlot                             html  
    spatialPreprocess                       html  
    finding level-2 HTML links ... done

** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BayesSpace' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppDist/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppDist/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cluster.cpp -o cluster.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BayesSpace.dll tmp.def RcppExports.o cluster.o -fopenmp -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lRlapack -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/BayesSpace.buildbin-libdir/BayesSpace/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BayesSpace' as BayesSpace_1.3.1.zip
* DONE (BayesSpace)