Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-26 11:07:14 -0500 (Wed, 26 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4164
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4059
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4001
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4118
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for BSgenome on riesling1


To the developers/maintainers of the BSgenome package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BSgenome.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 217/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.63.3  (landing page)
H. Pag├Ęs
Snapshot Date: 2022-01-25 13:55:17 -0500 (Tue, 25 Jan 2022)
git_url: https://git.bioconductor.org/packages/BSgenome
git_branch: master
git_last_commit: b83d582
git_last_commit_date: 2021-11-17 16:19:59 -0500 (Wed, 17 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'BiocGenerics' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: BSgenome
Version: 1.63.3
Command: chmod a+r BSgenome -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2022-01-25 16:27:36 -0500 (Tue, 25 Jan 2022)
EndedAt: 2022-01-25 16:29:14 -0500 (Tue, 25 Jan 2022)
EllapsedTime: 98.3 seconds
RetCode: 0
Status:   OK  
PackageFile: BSgenome_1.63.3.tar.gz
PackageFileSize: 5.77 MiB

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r BSgenome -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
###
##############################################################################
##############################################################################


* checking for file 'BSgenome/DESCRIPTION' ... OK
* preparing 'BSgenome':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
WARNING: directory 'BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata' is empty
WARNING: directory 'BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata' is empty
* building 'BSgenome_1.63.3.tar.gz'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-tools/fasta_to_sorted_2bit.R'