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This page was generated on 2022-01-25 11:06:50 -0500 (Tue, 25 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4164
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4059
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4001
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4118
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for BSgenome on riesling1


To the developers/maintainers of the BSgenome package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BSgenome.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 217/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.63.3  (landing page)
H. Pag├Ęs
Snapshot Date: 2022-01-24 13:55:18 -0500 (Mon, 24 Jan 2022)
git_url: https://git.bioconductor.org/packages/BSgenome
git_branch: master
git_last_commit: b83d582
git_last_commit_date: 2021-11-17 16:19:59 -0500 (Wed, 17 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'BiocGenerics' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: BSgenome
Version: 1.63.3
Command: rm -rf BSgenome.buildbin-libdir && mkdir BSgenome.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=BSgenome.buildbin-libdir BSgenome_1.63.3.tar.gz
StartedAt: 2022-01-24 20:42:57 -0500 (Mon, 24 Jan 2022)
EndedAt: 2022-01-24 20:44:08 -0500 (Mon, 24 Jan 2022)
EllapsedTime: 70.5 seconds
RetCode: 0
Status:   OK  
PackageFile: BSgenome_1.63.3.zip
PackageFileSize: 7.344 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BSgenome.buildbin-libdir && mkdir BSgenome.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=BSgenome.buildbin-libdir BSgenome_1.63.3.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'BSgenome' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BSgenome'
    finding HTML links ... done
    BSParams-class                          html  
    finding level-2 HTML links ... done

    BSgenome-class                          html  
    BSgenome-utils                          html  
    BSgenomeForge                           html  
    BSgenomeViews-class                     html  
    SNPlocs-class                           html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/BSgenome.buildbin-libdir/00LOCK-BSgenome/00new/BSgenome/help/snplocs.html
    XtraSNPlocs-class                       html  
    available.genomes                       html  
    bsapply                                 html  
    export-methods                          html  
    getSeq-methods                          html  
    injectSNPs                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'BSgenome' as BSgenome_1.63.3.zip
* DONE (BSgenome)