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This page was generated on 2024-03-28 11:38:48 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4708
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4446
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4471
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 101/2270HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AssessORF 1.21.0  (landing page)
Deepank Korandla
Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/AssessORF
git_branch: devel
git_last_commit: cfe8f1a
git_last_commit_date: 2023-10-24 11:09:10 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    ERROR  

CHECK results for AssessORF on lconway


To the developers/maintainers of the AssessORF package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AssessORF.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: AssessORF
Version: 1.21.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:AssessORF.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings AssessORF_1.21.0.tar.gz
StartedAt: 2024-03-27 19:31:09 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 19:33:15 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 125.8 seconds
RetCode: 0
Status:   OK  
CheckDir: AssessORF.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:AssessORF.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings AssessORF_1.21.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/AssessORF.Rcheck’
* using R Under development (unstable) (2024-03-18 r86148)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘AssessORF/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AssessORF’ version ‘1.21.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AssessORF’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) CompareAssessmentResults.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:77-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:79-80: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:81-83: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
AssessGenes       9.409  0.628  10.115
plot.Assessment   7.771  1.219   9.091
MapAssessmentData 7.282  0.160   7.497
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/AssessORF.Rcheck/00check.log’
for details.


Installation output

AssessORF.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL AssessORF
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘AssessORF’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AssessORF)

Tests output


Example timings

AssessORF.Rcheck/AssessORF-Ex.timings

nameusersystemelapsed
AssessGenes 9.409 0.62810.115
CompareAssessmentResults0.0220.0030.026
MapAssessmentData7.2820.1607.497
ScoreAssessmentResults0.0050.0010.005
as.matrix.Assessment0.0060.0010.007
mosaicplot.Assessment0.0230.0020.028
plot.Assessment7.7711.2199.091
print.Assessment1.0400.0641.114