Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-15 11:07:01 -0500 (Sat, 15 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4160
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4055
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3997
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4114
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for AnnotationForge on riesling1


To the developers/maintainers of the AnnotationForge package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationForge.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 59/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationForge 1.37.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-01-14 13:55:18 -0500 (Fri, 14 Jan 2022)
git_url: https://git.bioconductor.org/packages/AnnotationForge
git_branch: master
git_last_commit: ac8fa56
git_last_commit_date: 2021-10-26 12:03:32 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: AnnotationForge
Version: 1.37.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL AnnotationForge
StartedAt: 2022-01-14 15:47:57 -0500 (Fri, 14 Jan 2022)
EndedAt: 2022-01-14 15:48:55 -0500 (Fri, 14 Jan 2022)
EllapsedTime: 58.3 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL AnnotationForge
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'AnnotationForge' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AnnotationForge'
    finding HTML links ... done
    AnnDbPkg-maker                          html  
    finding level-2 HTML links ... done

    available.db0pkgs                       html  
    generateSeqnames_db                     html  
    getProbeDataAffy                        html  
    getProbeData_1lq                        html  
    makeChipPackageFromDataFrames           html  
    makeInpDb                               html  
    makeOrgPackage                          html  
    makeOrgPackageFromNCBI                  html  
    makeProbePackage                        html  
    sqlForge-makeCHIPDB                     html  
    sqlForge-popDB                          html  
    sqlForge-wrapDBPackages                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AnnotationForge)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'ADAM' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'ITALICS' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'SC3' is missing or broken
 done