Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-21 11:05:29 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for AnnotationForge on nebbiolo1


To the developers/maintainers of the AnnotationForge package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationForge.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 59/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationForge 1.37.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-01-20 13:55:17 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/AnnotationForge
git_branch: master
git_last_commit: ac8fa56
git_last_commit_date: 2021-10-26 12:03:32 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: AnnotationForge
Version: 1.37.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
StartedAt: 2022-01-20 15:44:44 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 15:47:01 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 137.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
###
##############################################################################
##############################################################################


* checking for file ‘AnnotationForge/DESCRIPTION’ ... OK
* preparing ‘AnnotationForge’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MakingNewAnnotationPackages.Rnw’ using knitr
Quitting from lines 208-215 (MakingNewAnnotationPackages.Rnw) 
Error: processing vignette 'MakingNewAnnotationPackages.Rnw' failed with diagnostics:
cannot open the connection
--- failed re-building ‘MakingNewAnnotationPackages.Rnw’

--- re-building ‘MakingNewOrganismPackages.Rmd’ using knitr
--- finished re-building ‘MakingNewOrganismPackages.Rmd’

--- re-building ‘SQLForge.Rnw’ using knitr
--- finished re-building ‘SQLForge.Rnw’

--- re-building ‘makeProbePackage.Rnw’ using knitr

See
  ‘/tmp/RtmpkmGNwm/hgu95av2probe.Rcheck/00check.log’
for details.


--- finished re-building ‘makeProbePackage.Rnw’

SUMMARY: processing the following file failed:
  ‘MakingNewAnnotationPackages.Rnw’

Error: Vignette re-building failed.
Execution halted