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This page was generated on 2022-01-17 11:06:45 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for AllelicImbalance on riesling1


To the developers/maintainers of the AllelicImbalance package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AllelicImbalance.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 41/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AllelicImbalance 1.33.1  (landing page)
Jesper R Gadin
Snapshot Date: 2022-01-16 13:55:18 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/AllelicImbalance
git_branch: master
git_last_commit: 7e81c3a
git_last_commit_date: 2021-11-17 15:17:12 -0500 (Wed, 17 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: AllelicImbalance
Version: 1.33.1
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL AllelicImbalance
StartedAt: 2022-01-16 16:15:01 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 16:16:24 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 83.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL AllelicImbalance
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'AllelicImbalance' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'chisq.test' from package 'stats' in package 'AllelicImbalance'
Creating a generic function for 'binom.test' from package 'stats' in package 'AllelicImbalance'
** help
*** installing help indices
  converting help for package 'AllelicImbalance'
    finding HTML links ... done
    ASEset-barplot                          html  
    ASEset-class                            html  
    ASEset-filters                          html  
    ASEset-gbarplot                         html  
    ASEset-glocationplot                    html  
    ASEset-gviztrack                        html  
    ASEset-scanForHeterozygotes             html  
    ASEset.old                              html  
    ASEset.sim                              html  
    ASEsetFromBam                           html  
    AllelicImbalance-package                html  
    DetectedAI-class                        html  
    DetectedAI-plot                         html  
    DetectedAI-summary                      html  
    GRvariants                              html  
    GlobalAnalysis-class                    html  
    LinkVariantAlmlof-class                 html  
    LinkVariantAlmlof-plot                  html  
    RegionSummary-class                     html  
    RiskVariant-class                       html  
    annotation-wrappers                     html  
    annotationBarplot                       html  
    barplot-lattice-support                 html  
    binom.test                              html  
    chisq.test                              html  
    cigar-utilities                         html  
    countAllelesFromBam                     html  
    coverageMatrixListFromGAL               html  
    decorateWithExons                       html  
    decorateWithGenes                       html  
    defaultMapBias                          html  
    defaultPhase                            html  
    detectAI                                html  
    fractionPlotDf                          html  
    gba                                     html  
    genomatrix                              html  
    genotype2phase                          html  
    getAlleleCounts                         html  
    getAlleleQuality                        html  
    getAreaFromGeneNames                    html  
    getDefaultMapBiasExpMean                html  
    getSnpIdFromLocation                    html  
    histplot                                html  
    implodeList-old                         html  
    import-bam-2                            html  
    import-bam                              html  
    import-bcf                              html  
    inferAlleles                            html  
    inferAltAllele                          html  
    inferGenotypes                          html  
    initialize-ASEset                       html  
    initialize-DetectedAI                   html  
    initialize-GlobalAnalysis               html  
    initialize-RiskVariant                  html  
    legendBarplot                           html  
    locationplot                            html  
    lva                                     html  
    lva.internal                            html  
    makeMaskedFasta                         html  
    mapBiasRef                              html  
    minCountFilt                            html  
    minFreqFilt                             html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-AllelicImbalance/00new/AllelicImbalance/help/minfreqFilt.html
    multiAllelicFilt                        html  
    phase2genotype                          html  
    phaseArray2phaseMatrix                  html  
    phaseMatrix2Array                       html  
    randomRef                               html  
    reads                                   html  
    refAllele                               html  
    regionSummary                           html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-AllelicImbalance/00new/AllelicImbalance/help/regionSummary.html
    scanForHeterozygotes-old                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AllelicImbalance)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'SPLINTER' is missing or broken
 done