Back to Multiple platform build/check report for BioC 3.9 experimental data

CHECK report for geneLenDataBase on malbec2

This page was generated on 2019-10-17 16:51:23 -0400 (Thu, 17 Oct 2019).

Package 136/371HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.20.0
Matthew Young , Nadia Davidson
Snapshot Date: 2019-10-17 09:00:12 -0400 (Thu, 17 Oct 2019)
URL: https://git.bioconductor.org/packages/geneLenDataBase
Branch: RELEASE_3_9
Last Commit: 70a1abe
Last Changed Date: 2019-05-02 11:56:23 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: geneLenDataBase
Version: 1.20.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings geneLenDataBase_1.20.0.tar.gz
StartedAt: 2019-10-17 13:13:54 -0400 (Thu, 17 Oct 2019)
EndedAt: 2019-10-17 13:23:16 -0400 (Thu, 17 Oct 2019)
EllapsedTime: 561.6 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings geneLenDataBase_1.20.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.9-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.9-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0830.0160.099
anoCar1.genscan.LENGTH0.0830.0320.115
anoCar1.xenoRefGene.LENGTH0.8730.0040.877
anoGam1.ensGene.LENGTH0.1220.0240.145
anoGam1.geneid.LENGTH0.0770.0480.125
anoGam1.genscan.LENGTH0.0740.0320.106
apiMel1.genscan.LENGTH0.0470.0400.087
apiMel2.ensGene.LENGTH0.1460.0200.166
apiMel2.geneid.LENGTH0.0970.0240.121
apiMel2.genscan.LENGTH0.0590.0160.075
aplCal1.xenoRefGene.LENGTH0.4390.0040.443
bosTau2.geneSymbol.LENGTH0.0860.0280.114
bosTau2.geneid.LENGTH0.2990.0040.303
bosTau2.genscan.LENGTH0.1040.0320.136
bosTau2.refGene.LENGTH0.0790.0280.108
bosTau2.sgpGene.LENGTH0.1120.0000.113
bosTau3.ensGene.LENGTH0.2100.0440.255
bosTau3.geneSymbol.LENGTH0.0790.0080.088
bosTau3.geneid.LENGTH0.1170.0080.125
bosTau3.genscan.LENGTH0.0880.0080.096
bosTau3.refGene.LENGTH0.0530.0360.089
bosTau3.sgpGene.LENGTH0.1520.0120.164
bosTau4.ensGene.LENGTH0.1920.0040.195
bosTau4.geneSymbol.LENGTH0.0800.0120.092
bosTau4.genscan.LENGTH0.0780.0080.087
bosTau4.nscanGene.LENGTH0.0550.0240.079
bosTau4.refGene.LENGTH0.0760.0200.097
braFlo1.xenoRefGene.LENGTH0.6260.0120.638
caeJap1.xenoRefGene.LENGTH0.4120.0040.415
caePb1.xenoRefGene.LENGTH0.5580.0000.557
caePb2.xenoRefGene.LENGTH0.5250.0040.529
caeRem2.xenoRefGene.LENGTH0.4470.0000.447
caeRem3.xenoRefGene.LENGTH0.3830.0000.383
calJac1.genscan.LENGTH0.1330.0200.153
calJac1.nscanGene.LENGTH0.7340.0480.782
calJac1.xenoRefGene.LENGTH0.7830.0000.783
canFam1.ensGene.LENGTH0.0990.0040.102
canFam1.geneSymbol.LENGTH0.0100.0000.009
canFam1.genscan.LENGTH0.0590.0080.067
canFam1.nscanGene.LENGTH0.0550.0040.059
canFam1.refGene.LENGTH0.0090.0000.009
canFam1.xenoRefGene.LENGTH0.5850.0000.586
canFam2.ensGene.LENGTH0.1340.0160.150
canFam2.geneSymbol.LENGTH0.0060.0040.010
canFam2.genscan.LENGTH0.0600.0000.059
canFam2.nscanGene.LENGTH0.0610.0080.068
canFam2.refGene.LENGTH0.0060.0040.009
canFam2.xenoRefGene.LENGTH0.6820.0000.682
cavPor3.ensGene.LENGTH0.1680.0080.199
cavPor3.genscan.LENGTH0.1100.0030.113
cavPor3.nscanGene.LENGTH0.0850.0160.101
cavPor3.xenoRefGene.LENGTH0.5530.0000.552
cb1.xenoRefGene.LENGTH0.3670.0000.368
cb3.xenoRefGene.LENGTH0.2970.0000.297
ce2.geneSymbol.LENGTH0.1340.0440.178
ce2.geneid.LENGTH0.0580.0000.058
ce2.refGene.LENGTH0.1360.0440.179
ce4.geneSymbol.LENGTH0.1290.0480.177
ce4.refGene.LENGTH0.2150.0560.271
ce4.xenoRefGene.LENGTH0.0810.0000.081
ce6.ensGene.LENGTH0.1030.0160.119
ce6.geneSymbol.LENGTH0.1320.0520.184
ce6.refGene.LENGTH0.1460.0320.178
ce6.xenoRefGene.LENGTH0.0690.0000.069
ci1.geneSymbol.LENGTH0.0090.0000.009
ci1.refGene.LENGTH0.0090.0000.009
ci1.xenoRefGene.LENGTH0.1590.0000.158
ci2.ensGene.LENGTH0.0600.0080.068
ci2.geneSymbol.LENGTH0.0090.0000.009
ci2.refGene.LENGTH0.0090.0000.009
ci2.xenoRefGene.LENGTH0.3150.0000.315
danRer3.ensGene.LENGTH0.1640.0120.176
danRer3.geneSymbol.LENGTH0.1220.0240.146
danRer3.refGene.LENGTH0.1070.0400.148
danRer4.ensGene.LENGTH0.1490.0000.149
danRer4.geneSymbol.LENGTH0.0940.0440.138
danRer4.genscan.LENGTH0.0720.0000.072
danRer4.nscanGene.LENGTH0.2160.0240.240
danRer4.refGene.LENGTH0.0980.0360.134
danRer5.ensGene.LENGTH0.10.00.1
danRer5.geneSymbol.LENGTH0.1050.0200.125
danRer5.refGene.LENGTH0.0980.0240.123
danRer5.vegaGene.LENGTH0.0820.0280.110
danRer5.vegaPseudoGene.LENGTH0.0030.0000.003
danRer6.ensGene.LENGTH0.1730.0240.198
danRer6.geneSymbol.LENGTH0.1110.0240.135
danRer6.refGene.LENGTH0.1050.0280.133
danRer6.xenoRefGene.LENGTH0.7160.0040.720
dm1.geneSymbol.LENGTH0.1270.0400.167
dm1.genscan.LENGTH0.0540.0080.062
dm1.refGene.LENGTH0.1130.0440.157
dm2.geneSymbol.LENGTH0.1310.0360.168
dm2.geneid.LENGTH0.0660.0320.099
dm2.genscan.LENGTH0.0310.0280.059
dm2.nscanGene.LENGTH0.0480.0000.049
dm2.refGene.LENGTH0.1080.0560.165
dm3.geneSymbol.LENGTH0.0690.0000.069
dm3.nscanPasaGene.LENGTH0.0950.0400.136
dm3.refGene.LENGTH0.0630.0000.063
dp2.genscan.LENGTH0.0590.0120.071
dp2.xenoRefGene.LENGTH0.2730.0000.272
dp3.geneid.LENGTH0.0830.0240.107
dp3.genscan.LENGTH0.0430.0200.064
dp3.xenoRefGene.LENGTH0.1350.0440.179
droAna1.geneid.LENGTH0.0720.0040.076
droAna1.genscan.LENGTH0.0220.0000.023
droAna1.xenoRefGene.LENGTH0.2010.0000.202
droAna2.genscan.LENGTH0.0450.0000.045
droAna2.xenoRefGene.LENGTH0.5460.0040.549
droEre1.genscan.LENGTH0.0620.0080.069
droEre1.xenoRefGene.LENGTH0.2710.0120.283
droGri1.genscan.LENGTH0.0660.0240.090
droGri1.xenoRefGene.LENGTH0.2510.0000.251
droMoj1.geneid.LENGTH0.1620.0240.185
droMoj1.genscan.LENGTH0.0710.0000.072
droMoj1.xenoRefGene.LENGTH0.2620.0160.279
droMoj2.genscan.LENGTH0.0560.0280.084
droMoj2.xenoRefGene.LENGTH0.2520.0040.257
droPer1.genscan.LENGTH0.0740.0200.094
droPer1.xenoRefGene.LENGTH0.2650.0040.270
droSec1.genscan.LENGTH0.0480.0240.073
droSec1.xenoRefGene.LENGTH0.2550.0040.259
droSim1.geneid.LENGTH0.0840.0240.109
droSim1.genscan.LENGTH0.0490.0120.061
droSim1.xenoRefGene.LENGTH0.8750.0040.880
droVir1.geneid.LENGTH0.0950.0080.103
droVir1.genscan.LENGTH0.0730.0240.097
droVir1.xenoRefGene.LENGTH0.2350.0000.235
droVir2.genscan.LENGTH0.0660.0120.078
droVir2.xenoRefGene.LENGTH0.2280.0080.236
droYak1.geneid.LENGTH0.0700.0480.119
droYak1.genscan.LENGTH0.0520.0200.072
droYak1.xenoRefGene.LENGTH0.1870.0000.187
droYak2.genscan.LENGTH0.0520.0160.068
droYak2.xenoRefGene.LENGTH0.2660.0040.271
equCab1.geneSymbol.LENGTH0.0090.0000.009
equCab1.geneid.LENGTH0.0930.0250.117
equCab1.nscanGene.LENGTH0.0790.0260.106
equCab1.refGene.LENGTH0.0050.0040.009
equCab1.sgpGene.LENGTH0.0720.0120.083
equCab2.ensGene.LENGTH0.1160.0400.156
equCab2.geneSymbol.LENGTH0.0110.0040.015
equCab2.nscanGene.LENGTH0.0960.0400.135
equCab2.refGene.LENGTH0.0140.0000.014
equCab2.xenoRefGene.LENGTH0.6190.0040.623
felCat3.ensGene.LENGTH0.1190.0040.123
felCat3.geneSymbol.LENGTH0.0040.0040.009
felCat3.geneid.LENGTH0.4740.0000.473
felCat3.genscan.LENGTH0.1430.0040.146
felCat3.nscanGene.LENGTH0.1080.0320.140
felCat3.refGene.LENGTH0.0060.0000.007
felCat3.sgpGene.LENGTH0.1350.0040.139
felCat3.xenoRefGene.LENGTH1.0510.0041.055
fr1.ensGene.LENGTH0.1000.0200.121
fr1.genscan.LENGTH0.0590.0040.064
fr2.ensGene.LENGTH0.3790.0200.400
galGal2.ensGene.LENGTH0.0530.0000.054
galGal2.geneSymbol.LENGTH0.0260.0120.039
galGal2.geneid.LENGTH0.0720.0240.097
galGal2.genscan.LENGTH0.0950.0360.131
galGal2.refGene.LENGTH0.0390.0120.052
galGal2.sgpGene.LENGTH0.1140.0360.150
galGal3.ensGene.LENGTH0.0830.0080.090
galGal3.geneSymbol.LENGTH0.0280.0080.035
galGal3.genscan.LENGTH0.1000.0320.131
galGal3.nscanGene.LENGTH0.0670.0000.067
galGal3.refGene.LENGTH0.0230.0110.034
galGal3.xenoRefGene.LENGTH0.5960.0000.595
gasAcu1.ensGene.LENGTH0.1350.0120.147
gasAcu1.nscanGene.LENGTH0.1450.0160.162
hg16.acembly.LENGTH0.3840.0000.384
hg16.ensGene.LENGTH0.0760.0120.088
hg16.exoniphy.LENGTH0.2290.0040.233
hg16.geneSymbol.LENGTH0.1180.0160.133
hg16.geneid.LENGTH0.0930.0320.124
hg16.genscan.LENGTH0.4840.0040.488
hg16.knownGene.LENGTH0.1300.0280.158
hg16.refGene.LENGTH0.0950.0080.103
hg16.sgpGene.LENGTH0.0630.0000.063
hg17.acembly.LENGTH0.4010.0040.405
hg17.acescan.LENGTH0.0120.0080.021
hg17.ccdsGene.LENGTH0.0390.0160.055
hg17.ensGene.LENGTH0.1530.0240.177
hg17.exoniphy.LENGTH0.3720.0040.377
hg17.geneSymbol.LENGTH0.1070.0040.111
hg17.geneid.LENGTH0.0950.0040.100
hg17.genscan.LENGTH0.0750.0000.075
hg17.knownGene.LENGTH0.1030.0280.131
hg17.refGene.LENGTH0.1010.0080.110
hg17.sgpGene.LENGTH0.6320.0440.677
hg17.vegaGene.LENGTH0.0770.0160.094
hg17.vegaPseudoGene.LENGTH0.0330.0040.037
hg17.xenoRefGene.LENGTH0.2370.0000.238
hg18.acembly.LENGTH0.5650.0000.565
hg18.acescan.LENGTH0.0220.0000.022
hg18.ccdsGene.LENGTH0.0640.0200.084
hg18.ensGene.LENGTH0.1820.0120.194
hg18.exoniphy.LENGTH0.390.000.39
hg18.geneSymbol.LENGTH0.1210.0080.128
hg18.geneid.LENGTH0.0920.0120.104
hg18.genscan.LENGTH0.0760.0000.075
hg18.knownGene.LENGTH0.1450.0200.164
hg18.knownGeneOld3.LENGTH0.0850.0240.109
hg18.refGene.LENGTH0.0890.0160.105
hg18.sgpGene.LENGTH0.0960.0160.111
hg18.sibGene.LENGTH0.7590.0040.764
hg18.xenoRefGene.LENGTH0.5270.0080.536
hg19.ccdsGene.LENGTH0.0750.0200.095
hg19.ensGene.LENGTH0.3500.0120.361
hg19.exoniphy.LENGTH0.4160.0040.420
hg19.geneSymbol.LENGTH0.4640.0240.487
hg19.knownGene.LENGTH0.1970.0240.220
hg19.nscanGene.LENGTH0.1290.0000.129
hg19.refGene.LENGTH0.1010.0080.109
hg19.xenoRefGene.LENGTH0.3160.0000.316
loxAfr3.xenoRefGene.LENGTH0.6670.0000.667
mm7.ensGene.LENGTH1.0220.0001.022
mm7.geneSymbol.LENGTH0.0720.0000.072
mm7.geneid.LENGTH0.0980.0080.105
mm7.genscan.LENGTH0.0550.0080.062
mm7.knownGene.LENGTH0.0680.0080.076
mm7.refGene.LENGTH0.0680.0000.067
mm7.sgpGene.LENGTH0.0880.0200.107
mm7.xenoRefGene.LENGTH0.2810.0000.281
mm8.ccdsGene.LENGTH0.0350.0160.051
mm8.ensGene.LENGTH0.0870.0160.102
mm8.geneSymbol.LENGTH0.0750.0000.075
mm8.geneid.LENGTH0.0900.0240.115
mm8.genscan.LENGTH0.0600.0000.061
mm8.knownGene.LENGTH0.0870.0040.090
mm8.nscanGene.LENGTH0.0540.0000.054
mm8.refGene.LENGTH0.0720.0000.072
mm8.sgpGene.LENGTH0.1010.0120.113
mm8.sibGene.LENGTH0.2410.0000.242
mm8.xenoRefGene.LENGTH0.3860.0200.406
mm9.acembly.LENGTH0.2980.0080.306
mm9.ccdsGene.LENGTH0.0430.0240.067
mm9.ensGene.LENGTH0.2020.0200.223
mm9.exoniphy.LENGTH0.3750.0040.379
mm9.geneSymbol.LENGTH0.0750.0040.079
mm9.geneid.LENGTH0.1080.0200.129
mm9.genscan.LENGTH0.0610.0080.069
mm9.knownGene.LENGTH0.1360.0360.173
mm9.nscanGene.LENGTH0.0510.0040.055
mm9.refGene.LENGTH0.0770.0000.078
mm9.sgpGene.LENGTH0.1050.0200.124
mm9.xenoRefGene.LENGTH0.3870.0240.411
monDom1.genscan.LENGTH0.0730.0120.086
monDom4.ensGene.LENGTH0.0950.0080.104
monDom4.geneSymbol.LENGTH0.0050.0000.006
monDom4.genscan.LENGTH0.1060.0320.137
monDom4.nscanGene.LENGTH0.1070.0440.151
monDom4.refGene.LENGTH0.0050.0000.006
monDom4.xenoRefGene.LENGTH0.3630.0000.363
monDom5.ensGene.LENGTH0.0990.0000.099
monDom5.geneSymbol.LENGTH0.0050.0000.005
monDom5.genscan.LENGTH0.0480.0000.047
monDom5.nscanGene.LENGTH0.1030.0000.103
monDom5.refGene.LENGTH0.0060.0000.006
monDom5.xenoRefGene.LENGTH0.650.000.65
ornAna1.ensGene.LENGTH0.1400.0200.159
ornAna1.geneSymbol.LENGTH0.0030.0000.002
ornAna1.refGene.LENGTH0.0030.0000.002
ornAna1.xenoRefGene.LENGTH0.5750.0040.579
oryLat2.ensGene.LENGTH0.0930.0160.108
oryLat2.geneSymbol.LENGTH0.0050.0010.006
oryLat2.refGene.LENGTH0.0000.0060.006
oryLat2.xenoRefGene.LENGTH0.6040.0000.604
panTro1.ensGene.LENGTH0.1140.0040.117
panTro1.geneid.LENGTH0.0920.0360.128
panTro1.genscan.LENGTH0.0550.0040.060
panTro1.xenoRefGene.LENGTH0.1270.0240.151
panTro2.ensGene.LENGTH0.1070.0160.123
panTro2.geneSymbol.LENGTH0.1160.0120.128
panTro2.genscan.LENGTH0.3290.0040.334
panTro2.nscanGene.LENGTH0.0600.0040.064
panTro2.refGene.LENGTH0.1120.0160.128
panTro2.xenoRefGene.LENGTH0.4520.0000.452
petMar1.xenoRefGene.LENGTH0.2680.0280.296
ponAbe2.ensGene.LENGTH0.1290.0160.144
ponAbe2.geneSymbol.LENGTH0.0150.0120.027
ponAbe2.genscan.LENGTH0.0590.0000.058
ponAbe2.nscanGene.LENGTH0.0580.0000.058
ponAbe2.refGene.LENGTH0.0150.0120.027
ponAbe2.xenoRefGene.LENGTH0.6050.0000.605
priPac1.xenoRefGene.LENGTH0.3100.0040.315
rheMac2.ensGene.LENGTH0.1310.0160.147
rheMac2.geneSymbol.LENGTH0.0010.0080.009
rheMac2.geneid.LENGTH0.0850.0040.089
rheMac2.nscanGene.LENGTH0.0570.0000.057
rheMac2.refGene.LENGTH0.0050.0040.009
rheMac2.sgpGene.LENGTH0.0800.0120.092
rheMac2.xenoRefGene.LENGTH0.4790.0000.479
rn3.ensGene.LENGTH0.1460.0280.173
rn3.geneSymbol.LENGTH0.1210.0120.133
rn3.geneid.LENGTH0.0450.0040.049
rn3.genscan.LENGTH0.0600.0150.076
rn3.knownGene.LENGTH0.0460.0160.061
rn3.nscanGene.LENGTH0.0570.0000.057
rn3.refGene.LENGTH0.1000.0360.136
rn3.sgpGene.LENGTH0.0640.0040.068
rn3.xenoRefGene.LENGTH0.6010.0000.602
rn4.ensGene.LENGTH0.1370.0040.141
rn4.geneSymbol.LENGTH0.1000.0280.128
rn4.geneid.LENGTH0.1380.0240.162
rn4.genscan.LENGTH0.0600.0120.072
rn4.knownGene.LENGTH0.0450.0160.062
rn4.nscanGene.LENGTH0.1160.0400.156
rn4.refGene.LENGTH0.1010.0280.129
rn4.sgpGene.LENGTH0.1080.0200.128
rn4.xenoRefGene.LENGTH0.3640.0000.365
sacCer1.ensGene.LENGTH0.0280.0200.048
sacCer2.ensGene.LENGTH0.0370.0120.050
strPur1.geneSymbol.LENGTH0.0040.0030.008
strPur1.genscan.LENGTH0.0620.0000.061
strPur1.refGene.LENGTH0.0080.0000.007
strPur1.xenoRefGene.LENGTH0.4040.0000.404
strPur2.geneSymbol.LENGTH0.0080.0000.008
strPur2.genscan.LENGTH0.1200.0120.132
strPur2.refGene.LENGTH0.0060.0000.007
strPur2.xenoRefGene.LENGTH0.6010.0040.604
supportedGeneIDs0.3620.0044.661
supportedGenomes0.1800.0000.764
taeGut1.ensGene.LENGTH0.0710.0040.075
taeGut1.geneSymbol.LENGTH0.0040.0000.004
taeGut1.genscan.LENGTH0.0740.0200.095
taeGut1.nscanGene.LENGTH0.0610.0190.080
taeGut1.refGene.LENGTH0.0030.0010.003
taeGut1.xenoRefGene.LENGTH0.4630.0020.465
tetNig1.ensGene.LENGTH0.1180.0200.139
tetNig1.geneid.LENGTH0.0820.0080.090
tetNig1.genscan.LENGTH0.1080.0120.119
tetNig1.nscanGene.LENGTH0.0780.0160.093
tetNig2.ensGene.LENGTH0.0820.0160.099
unfactor0.0030.0000.004
xenTro1.genscan.LENGTH0.0880.0000.088
xenTro2.ensGene.LENGTH0.1060.0400.147
xenTro2.geneSymbol.LENGTH0.0470.0240.071
xenTro2.genscan.LENGTH0.1070.0120.118
xenTro2.refGene.LENGTH0.0620.0120.073