Back to Multiple platform build/check report for BioC 3.9 experimental data

CHECK report for MethylAidData on malbec2

This page was generated on 2019-10-17 16:51:30 -0400 (Thu, 17 Oct 2019).

Package 216/371HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MethylAidData 1.16.0
M. van Iterson
Snapshot Date: 2019-10-17 09:00:12 -0400 (Thu, 17 Oct 2019)
URL: https://git.bioconductor.org/packages/MethylAidData
Branch: RELEASE_3_9
Last Commit: 6a7f8ed
Last Changed Date: 2019-05-02 11:56:43 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: MethylAidData
Version: 1.16.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:MethylAidData.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings MethylAidData_1.16.0.tar.gz
StartedAt: 2019-10-17 13:27:49 -0400 (Thu, 17 Oct 2019)
EndedAt: 2019-10-17 13:30:17 -0400 (Thu, 17 Oct 2019)
EllapsedTime: 147.8 seconds
RetCode: 0
Status:  OK 
CheckDir: MethylAidData.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:MethylAidData.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings MethylAidData_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.9-data-experiment/meat/MethylAidData.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MethylAidData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MethylAidData’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MethylAidData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 20.9Mb
  sub-directories of 1Mb or more:
    data  20.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
MethylAidDataEPIC 24.661  0.388  25.761
exampleDataLarge  22.999  0.272  28.366
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.9-data-experiment/meat/MethylAidData.Rcheck/00check.log’
for details.



Installation output

MethylAidData.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL MethylAidData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘MethylAidData’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MethylAidData)

Tests output


Example timings

MethylAidData.Rcheck/MethylAidData-Ex.timings

nameusersystemelapsed
MethylAidDataEPIC24.661 0.38825.761
exampleDataLarge22.999 0.27228.366