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BUILD BIN report for chromVAR on merida2

This page was generated on 2019-04-09 13:35:55 -0400 (Tue, 09 Apr 2019).

Package 270/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chromVAR 1.5.0
Alicia Schep
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/chromVAR
Branch: master
Last Commit: fbbba6b
Last Changed Date: 2018-11-30 00:02:42 -0400 (Fri, 30 Nov 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]

Summary

Package: chromVAR
Version: 1.5.0
Command: rm -rf chromVAR.buildbin-libdir && mkdir chromVAR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh chromVAR_1.5.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R chromVAR.buildbin-libdir
StartedAt: 2019-04-09 04:58:21 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 04:59:46 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 84.8 seconds
RetCode: 0
Status:  OK 
PackageFile: chromVAR_1.5.0.tgz
PackageFileSize: 1.834 MiB

Command output

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###
### Running command:
###
###   rm -rf chromVAR.buildbin-libdir && mkdir chromVAR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh chromVAR_1.5.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R chromVAR.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=chromVAR.buildbin-libdir chromVAR_1.5.0.tar.gz'
>>>>>>> 

* installing *source* package ‘chromVAR’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c pwm_similarity.cpp -o pwm_similarity.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c utils.cpp -o utils.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o chromVAR.so RcppExports.o pwm_similarity.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/chromVAR.buildbin-libdir/chromVAR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (chromVAR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so"