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INSTALL report for CALIB on malbec2

This page was generated on 2019-10-16 11:56:29 -0400 (Wed, 16 Oct 2019).

Package 202/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CALIB 1.50.0
Hui Zhao
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/CALIB
Branch: RELEASE_3_9
Last Commit: b958554
Last Changed Date: 2019-05-02 11:53:07 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: CALIB
Version: 1.50.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL CALIB
StartedAt: 2019-10-15 18:15:03 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 18:15:26 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 22.7 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL CALIB
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘CALIB’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c Design.cpp -o Design.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c Estimation.cpp -o Estimation.o
Estimation.cpp: In function ‘SEXPREC* estimation(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
Estimation.cpp:147:78: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
  char *name[8] = {"MuS","Ka","P1","P2","SigmaA","SigmaM","SigmaS","SpotError"};
                                                                              ^
Estimation.cpp:147:78: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
Estimation.cpp:147:78: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
Estimation.cpp:147:78: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
Estimation.cpp:147:78: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
Estimation.cpp:147:78: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
Estimation.cpp:147:78: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
Estimation.cpp:147:78: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c NormalizedData.cpp -o NormalizedData.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c ParameterofOneArray.cpp -o ParameterofOneArray.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c RawDataofOneArray.cpp -o RawDataofOneArray.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c SpikeofOneArray.cpp -o SpikeofOneArray.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o CALIB.so Design.o Estimation.o NormalizedData.o ParameterofOneArray.o RawDataofOneArray.o SpikeofOneArray.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-CALIB/00new/CALIB/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CALIB)