Package: BufferedMatrixMethods

Version: 1.48.0

Command: rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrixMethods_1.48.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BufferedMatrixMethods.buildbin-libdir

StartedAt: 2019-10-16 08:15:56 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 08:16:13 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 17.6 seconds

RetCode: 0

Status:  OK

PackageFile: BufferedMatrixMethods_1.48.0.tgz

PackageFileSize: 51.2 KiB

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### Running command:
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###   rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrixMethods_1.48.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BufferedMatrixMethods.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.48.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BufferedMatrixMethods’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BufferedMatrix/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c init_package.c -o init_package.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BufferedMatrix/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable]
  int i,j;
      ^
preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable]
  int current_mode;
      ^
preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable]
  int current_mode;
      ^
preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable]
  int current_mode;
      ^
preprocess_bm.c:453:12: warning: unused function 'min' [-Wunused-function]
static int min(int x1,int x2){
           ^
5 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/BufferedMatrixMethods.buildbin-libdir/00LOCK-BufferedMatrixMethods/00new/BufferedMatrixMethods/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BufferedMatrixMethods)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"