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INSTALL report for BiocNeighbors on tokay2

This page was generated on 2019-10-16 12:41:51 -0400 (Wed, 16 Oct 2019).

Package 147/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocNeighbors 1.2.0
Aaron Lun
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/BiocNeighbors
Branch: RELEASE_3_9
Last Commit: f754c63
Last Changed Date: 2019-05-02 11:54:12 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocNeighbors
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BiocNeighbors_1.2.0.tar.gz && rm -rf BiocNeighbors.buildbin-libdir && mkdir BiocNeighbors.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocNeighbors.buildbin-libdir BiocNeighbors_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BiocNeighbors_1.2.0.zip && rm BiocNeighbors_1.2.0.tar.gz BiocNeighbors_1.2.0.zip
StartedAt: 2019-10-15 19:32:32 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:37:41 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 309.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BiocNeighbors_1.2.0.tar.gz && rm -rf BiocNeighbors.buildbin-libdir && mkdir BiocNeighbors.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocNeighbors.buildbin-libdir BiocNeighbors_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BiocNeighbors_1.2.0.zip && rm BiocNeighbors_1.2.0.tar.gz BiocNeighbors_1.2.0.zip
###
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100 56104  100 56104    0     0   840k      0 --:--:-- --:--:-- --:--:--  944k

install for i386

* installing *source* package 'BiocNeighbors' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c annoy.cpp -o annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
                 from annoy.h:17,
                 from annoy.cpp:1:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
                                                ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
                                                    ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c build_annoy.cpp -o build_annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
                 from annoy.h:17,
                 from build_annoy.cpp:2:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
                                                ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
                                                    ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c build_hnsw.cpp -o build_hnsw.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c build_vptree.cpp -o build_vptree.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c distances.cpp -o distances.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_annoy.cpp -o find_annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
                 from annoy.h:17,
                 from find_annoy.cpp:2:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
                                                ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
                                                    ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_hnsw.cpp -o find_hnsw.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_kmknn.cpp -o find_kmknn.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_vptree.cpp -o find_vptree.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c hnsw.cpp -o hnsw.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c kmknn.cpp -o kmknn.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c neighbor_queue.cpp -o neighbor_queue.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c query_annoy.cpp -o query_annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
                 from annoy.h:17,
                 from query_annoy.cpp:2:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
                                                ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
                                                    ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c query_hnsw.cpp -o query_hnsw.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c query_kmknn.cpp -o query_kmknn.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c query_vptree.cpp -o query_vptree.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c range_find_kmknn.cpp -o range_find_kmknn.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c range_find_vptree.cpp -o range_find_vptree.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c range_query_kmknn.cpp -o range_query_kmknn.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c range_query_vptree.cpp -o range_query_vptree.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c vptree.cpp -o vptree.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BiocNeighbors.dll tmp.def annoy.o build_annoy.o build_hnsw.o build_vptree.o distances.o find_annoy.o find_hnsw.o find_kmknn.o find_vptree.o hnsw.o init.o kmknn.o neighbor_queue.o query_annoy.o query_hnsw.o query_kmknn.o query_vptree.o range_find_kmknn.o range_find_vptree.o range_query_kmknn.o range_query_vptree.o utils.o vptree.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BiocNeighbors.buildbin-libdir/00LOCK-BiocNeighbors/00new/BiocNeighbors/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiocNeighbors'
    finding HTML links ... done
    AnnoyIndex                              html  
    AnnoyParam                              html  
    BiocNeighborIndex                       html  
    BiocNeighborParam                       html  
    BiocNeighbors-algorithms                html  
    BiocNeighbors-raw-index                 html  
    BiocNeighbors-ties                      html  
    HnswIndex                               html  
    HnswParam                               html  
    KmknnIndex                              html  
    KmknnParam                              html  
    VptreeIndex                             html  
    VptreeParam                             html  
    buildAnnoy                              html  
    buildHnsw                               html  
    buildIndex                              html  
    buildKmknn                              html  
    buildVptree                             html  
    find-methods                            html  
    finding level-2 HTML links ... done

    findKNN                                 html  
    findNeighbors                           html  
    query-methods                           html  
    queryKNN                                html  
    queryNeighbors                          html  
    rangeFind-methods                       html  
    rangeQuery-methods                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BiocNeighbors' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c annoy.cpp -o annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
                 from annoy.h:17,
                 from annoy.cpp:1:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
                                                ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
                                                    ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c build_annoy.cpp -o build_annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
                 from annoy.h:17,
                 from build_annoy.cpp:2:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
                                                ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
                                                    ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c build_hnsw.cpp -o build_hnsw.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c build_vptree.cpp -o build_vptree.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c distances.cpp -o distances.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_annoy.cpp -o find_annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
                 from annoy.h:17,
                 from find_annoy.cpp:2:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
                                                ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
                                                    ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_hnsw.cpp -o find_hnsw.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_kmknn.cpp -o find_kmknn.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_vptree.cpp -o find_vptree.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c hnsw.cpp -o hnsw.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c kmknn.cpp -o kmknn.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c neighbor_queue.cpp -o neighbor_queue.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c query_annoy.cpp -o query_annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
                 from annoy.h:17,
                 from query_annoy.cpp:2:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
                                                ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
                                                    ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c query_hnsw.cpp -o query_hnsw.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c query_kmknn.cpp -o query_kmknn.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c query_vptree.cpp -o query_vptree.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c range_find_kmknn.cpp -o range_find_kmknn.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c range_find_vptree.cpp -o range_find_vptree.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c range_query_kmknn.cpp -o range_query_kmknn.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c range_query_vptree.cpp -o range_query_vptree.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c vptree.cpp -o vptree.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BiocNeighbors.dll tmp.def annoy.o build_annoy.o build_hnsw.o build_vptree.o distances.o find_annoy.o find_hnsw.o find_kmknn.o find_vptree.o hnsw.o init.o kmknn.o neighbor_queue.o query_annoy.o query_hnsw.o query_kmknn.o query_vptree.o range_find_kmknn.o range_find_vptree.o range_query_kmknn.o range_query_vptree.o utils.o vptree.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BiocNeighbors.buildbin-libdir/BiocNeighbors/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocNeighbors' as BiocNeighbors_1.2.0.zip
* DONE (BiocNeighbors)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'BiocNeighbors' successfully unpacked and MD5 sums checked