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BUILD report for Cardinal on celaya2

This page was generated on 2019-04-09 13:13:26 -0400 (Tue, 09 Apr 2019).

Package 209/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Cardinal 2.1.6
Kylie A. Bemis
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/Cardinal
Branch: master
Last Commit: 9c8dd9a
Last Changed Date: 2019-02-21 16:21:08 -0400 (Thu, 21 Feb 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: Cardinal
Version: 2.1.6
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Cardinal
StartedAt: 2019-04-08 21:11:36 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 21:14:14 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 157.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Cardinal
###
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* checking for file ‘Cardinal/DESCRIPTION’ ... OK
* preparing ‘Cardinal’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Cardinal-2-guide.Rnw’ using Sweave
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Loading required package: BiocParallel
Loading required package: EBImage
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:base’:

    expand.grid

Loading required package: ProtGenerics

Welcome to Cardinal (version 2.1.6)

    To get started, view the introductory vignettes with
    'browseVignettes("Cardinal")'.


Attaching package: ‘Cardinal’

The following object is masked from ‘package:stats’:

    filter


Error: processing vignette 'Cardinal-2-guide.Rnw' failed with diagnostics:
 chunk 33 
Error in if (nrow(coord) == 0) { : argument is of length zero

--- failed re-building ‘Cardinal-2-guide.Rnw’

--- re-building ‘Cardinal-development.Rnw’ using Sweave
--- finished re-building ‘Cardinal-development.Rnw’

--- re-building ‘Cardinal-walkthrough.Rnw’ using Sweave
--- finished re-building ‘Cardinal-walkthrough.Rnw’

SUMMARY: processing the following file failed:
  ‘Cardinal-2-guide.Rnw’

Error: Vignette re-building failed.
Execution halted