Malte Thodberg
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/CAGEfightR |
| Branch: master |
| Last Commit: 58a8416 |
| Last Changed Date: 2019-03-13 07:53:54 -0400 (Wed, 13 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:39:15 -0400 (Tue, 09 Apr 2019).
| Package 197/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CAGEfightR 1.3.0 Malte Thodberg
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: CAGEfightR |
| Version: 1.3.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CAGEfightR.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings CAGEfightR_1.3.0.tar.gz |
| StartedAt: 2019-04-09 01:30:20 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 01:40:08 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 587.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: CAGEfightR.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CAGEfightR.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings CAGEfightR_1.3.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/CAGEfightR.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CAGEfightR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CAGEfightR' version '1.3.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CAGEfightR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
findLinks 1.84 0.00 49.63
trackLinks 1.05 0.08 21.25
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
findLinks 1.70 0.03 40.48
trackLinks 0.84 0.00 23.22
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
CAGEfightR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CAGEfightR_1.3.0.tar.gz && rm -rf CAGEfightR.buildbin-libdir && mkdir CAGEfightR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAGEfightR.buildbin-libdir CAGEfightR_1.3.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CAGEfightR_1.3.0.zip && rm CAGEfightR_1.3.0.tar.gz CAGEfightR_1.3.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2292k 100 2292k 0 0 24.3M 0 --:--:-- --:--:-- --:--:-- 26.3M
install for i386
* installing *source* package 'CAGEfightR' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CAGEfightR'
finding HTML links ... done
assignGeneID html
assignMissingID html
assignTxID html
assignTxType html
balanceBC html
balanceD html
bwCommonGenome html
bwGenomeCompatibility html
bwValid html
calcBidirectionality html
calcComposition html
calcPooled html
calcShape html
calcSupport html
calcTPM html
calcTotalTags html
checkPeaked html
checkPooled html
clusterBidirectionally html
clusterUnidirectionally html
combineClusters html
exampleDesign html
findLinks html
findStretches html
quantifyCTSSs html
quantifyClusters html
quantifyGenes html
quickEnhancers html
quickTSSs html
shapeEntropy html
shapeIQR html
shapeMultimodality html
subsetByBidirectionality html
subsetByComposition html
subsetBySupport html
swapRanges html
swapScores html
trackBalance html
trackCTSS html
trackClusters html
trackLinks html
trimToPeak html
trimToPercentiles html
tuneTagClustering html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CAGEfightR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CAGEfightR' as CAGEfightR_1.3.0.zip
* DONE (CAGEfightR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'CAGEfightR' successfully unpacked and MD5 sums checked
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CAGEfightR.Rcheck/examples_i386/CAGEfightR-Ex.timings
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CAGEfightR.Rcheck/examples_x64/CAGEfightR-Ex.timings
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