Back to Multiple platform build/check report for BioC 3.9
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

BUILD report for BiocSingular on tokay2

This page was generated on 2019-04-09 12:44:15 -0400 (Tue, 09 Apr 2019).

Package 149/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocSingular 0.99.14
Aaron Lun
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/BiocSingular
Branch: master
Last Commit: 2b91ce4
Last Changed Date: 2019-03-23 22:18:14 -0400 (Sat, 23 Mar 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: BiocSingular
Version: 0.99.14
Command: chmod a+r BiocSingular -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BiocSingular
StartedAt: 2019-04-09 00:46:25 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 00:47:15 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 50.1 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r BiocSingular -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BiocSingular
###
##############################################################################
##############################################################################


* checking for file 'BiocSingular/DESCRIPTION' ... OK
* preparing 'BiocSingular':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'decomposition.Rmd' using rmarkdown
Loading required package: knitr
Warning in MulticoreParam(2) :
  MulticoreParam() not supported on Windows, use SnowParam()
Quitting from lines 127-130 (decomposition.Rmd) 
Error: processing vignette 'decomposition.Rmd' failed with diagnostics:
'mcparallel' is not an exported object from 'namespace:parallel'
--- failed re-building 'decomposition.Rmd'

--- re-building 'representations.Rmd' using rmarkdown
--- finished re-building 'representations.Rmd'

SUMMARY: processing the following file failed:
  'decomposition.Rmd'

Error: Vignette re-building failed.
Execution halted