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BUILD BIN report for ADAM on celaya2

This page was generated on 2019-04-09 13:21:29 -0400 (Tue, 09 Apr 2019).

Package 16/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ADAM 0.99.66
Jose Luiz Rybarczyk Filho
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/ADAM
Branch: master
Last Commit: d87ff49
Last Changed Date: 2018-11-15 17:46:12 -0400 (Thu, 15 Nov 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: ADAM
Version: 0.99.66
Command: rm -rf ADAM.buildbin-libdir && mkdir ADAM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ADAM_0.99.66.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ADAM.buildbin-libdir
StartedAt: 2019-04-09 06:37:41 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 06:38:57 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 76.2 seconds
RetCode: 0
Status:  OK 
PackageFile: ADAM_0.99.66.tgz
PackageFileSize: 411.5 KiB

Command output

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###
### Running command:
###
###   rm -rf ADAM.buildbin-libdir && mkdir ADAM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ADAM_0.99.66.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ADAM.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ADAM.buildbin-libdir ADAM_0.99.66.tar.gz'
>>>>>>> 

* installing *source* package ‘ADAM’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include  -fPIC  -Wall -g -O2  -c MakeBootstrap.cpp -o MakeBootstrap.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include  -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ADAM.so MakeBootstrap.o RcppExports.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/ADAM.buildbin-libdir/00LOCK-ADAM/00new/ADAM/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ADAM)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ADAM.buildbin-libdir/ADAM/libs//ADAM.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "ADAM.buildbin-libdir/ADAM/libs//ADAM.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "ADAM.buildbin-libdir/ADAM/libs//ADAM.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "ADAM.buildbin-libdir/ADAM/libs//ADAM.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "ADAM.buildbin-libdir/ADAM/libs//ADAM.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "ADAM.buildbin-libdir/ADAM/libs//ADAM.so"