Back to Multiple platform build/check report for BioC 3.8 experimental data

CHECK report for miRNATarget on malbec1

This page was generated on 2019-04-16 15:26:05 -0400 (Tue, 16 Apr 2019).

Package 216/360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRNATarget 1.20.0
Y-h. Taguchi
Snapshot Date: 2019-04-16 11:00:05 -0400 (Tue, 16 Apr 2019)
URL: https://git.bioconductor.org/packages/miRNATarget
Branch: RELEASE_3_8
Last Commit: 38c949c
Last Changed Date: 2018-10-30 11:36:22 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: miRNATarget
Version: 1.20.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings miRNATarget_1.20.0.tar.gz
StartedAt: 2019-04-16 13:54:09 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 13:54:54 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 45.0 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings miRNATarget_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.8-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.



Installation output

miRNATarget.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL miRNATarget
###
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘miRNATarget’ ...
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.0120.0040.066
HS_refseq_to_affy_hc_g1100.0040.0040.023
HS_refseq_to_affy_hg_focus0.0240.0040.061
HS_refseq_to_affy_hg_u133_plus_20.1040.0040.123
HS_refseq_to_affy_hg_u133a0.0640.0040.086
HS_refseq_to_affy_hg_u133a_20.0640.0040.076
HS_refseq_to_affy_hg_u133b0.0360.0000.048
HS_refseq_to_affy_hg_u95a0.0440.0000.053
HS_refseq_to_affy_hg_u95av20.0440.0000.075
HS_refseq_to_affy_hg_u95b0.0160.0000.100
HS_refseq_to_affy_hg_u95c0.0120.0000.030
HS_refseq_to_affy_hg_u95d0.0080.0000.062
HS_refseq_to_affy_hg_u95e0.0160.0000.033
HS_refseq_to_affy_huex_1_0_st_v21.0600.0121.092
HS_refseq_to_affy_hugene_1_0_st_v10.0560.0000.060
HS_refseq_to_affy_hugenefl0.0160.0000.027
HS_refseq_to_affy_u133_x3p0.0720.0040.107
HS_refseq_to_agilent_cgh_44b0.0120.0000.014
HS_refseq_to_agilent_wholegenome0.0800.0000.089
HS_refseq_to_canonical_transcript_stable_id0.0800.0040.087
HS_refseq_to_ccds0.0480.0000.066
HS_refseq_to_codelink0.0480.0000.047
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0000.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0040.0000.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0000.0000.001
HS_refseq_to_embl0.7520.0120.773
HS_refseq_to_ensembl_exon_id0.0040.0000.002
HS_refseq_to_ensembl_gene_id0.0520.0000.052
HS_refseq_to_ensembl_peptide_id0.0400.0080.047
HS_refseq_to_ensembl_transcript_id0.0600.0000.061
HS_refseq_to_entrezgene0.0520.0000.054
HS_refseq_to_hgnc_id0.0520.0000.051
HS_refseq_to_hgnc_symbol0.0480.0000.051
HS_refseq_to_hgnc_transcript_name0.0480.0080.054
HS_refseq_to_illumina_humanht_120.1800.0080.202
HS_refseq_to_illumina_humanwg_6_v10.0440.0000.044
HS_refseq_to_illumina_humanwg_6_v20.0400.0000.039
HS_refseq_to_illumina_humanwg_6_v30.0440.0040.047
HS_refseq_to_interpro0.1160.0000.115
HS_refseq_to_ipi0.1120.0040.117
HS_refseq_to_merops0.0000.0040.017
HS_refseq_to_pdb0.0880.0000.088
HS_refseq_to_pfam0.0680.0000.072
HS_refseq_to_phalanx_onearray0.0440.0000.043
HS_refseq_to_protein_id0.7840.0000.790
HS_refseq_to_refseq_dna0.0600.0000.084
HS_refseq_to_refseq_genomic0.0000.0000.022
HS_refseq_to_refseq_peptide0.3120.0000.312
HS_refseq_to_rfam0.0040.0000.039
HS_refseq_to_rfam_gene_name0.0000.0000.078
HS_refseq_to_rfam_transcript_name0.0000.0000.001
HS_refseq_to_smart0.0600.0000.194
HS_refseq_to_tigrfam0.0080.0000.204
HS_refseq_to_ucsc0.0800.0000.084
HS_refseq_to_unigene0.1120.0000.115
HS_refseq_to_uniprot_genename0.0760.0000.075
HS_refseq_to_uniprot_genename_transcript_name0.0040.0000.003
HS_refseq_to_uniprot_sptrembl0.0000.0000.003
HS_refseq_to_uniprot_swissprot0.0000.0000.002
HS_refseq_to_uniprot_swissprot_accession0.0040.0000.002
HS_refseq_to_wikigene_id0.0040.0000.002
HS_refseq_to_wikigene_name0.0560.0000.235
MM_conv_id0.0040.0000.082
MM_refseq_to_affy_mg_u74a0.0200.0000.026
MM_refseq_to_affy_mg_u74av20.0160.0000.047
MM_refseq_to_affy_mg_u74b0.020.000.02
MM_refseq_to_affy_mg_u74bv20.0240.0000.024
MM_refseq_to_affy_mg_u74c0.0040.0040.020
MM_refseq_to_affy_mg_u74cv20.0120.0000.044
MM_refseq_to_affy_moe430a0.0560.0000.100
MM_refseq_to_affy_moe430b0.0200.0040.083
MM_refseq_to_affy_moex_1_0_st_v10.5600.0040.584
MM_refseq_to_affy_mogene_1_0_st_v10.0640.0040.125
MM_refseq_to_affy_mouse430_20.0640.0040.113
MM_refseq_to_affy_mouse430a_20.0480.0000.136
MM_refseq_to_affy_mu11ksuba0.0160.0000.024
MM_refseq_to_affy_mu11ksubb0.0120.0000.013
MM_refseq_to_agilent_wholegenome0.0880.0040.096
MM_refseq_to_canonical_transcript_stable_id0.0880.0040.095
MM_refseq_to_ccds0.2040.0040.209
MM_refseq_to_codelink0.0520.0000.051
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0000.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0040.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0000.0000.002
MM_refseq_to_embl0.3800.0000.383
MM_refseq_to_ensembl_exon_id0.0000.0000.002
MM_refseq_to_ensembl_gene_id0.0640.0000.066
MM_refseq_to_ensembl_peptide_id0.3280.0000.329
MM_refseq_to_ensembl_transcript_id0.0640.0000.075
MM_refseq_to_entrezgene0.0360.0000.040
MM_refseq_to_fantom0.1240.0000.123
MM_refseq_to_illumina_mousewg_6_v10.0640.0040.068
MM_refseq_to_illumina_mousewg_6_v20.0680.0000.066
MM_refseq_to_interpro0.1480.0000.148
MM_refseq_to_ipi0.0040.0000.028
MM_refseq_to_merops0.0040.0000.050
MM_refseq_to_mgi_id0.0480.0000.056
MM_refseq_to_mgi_symbol0.0480.0000.048
MM_refseq_to_mgi_transcript_name0.0480.0000.048
MM_refseq_to_pdb0.0080.0040.197
MM_refseq_to_pfam0.0920.0000.093
MM_refseq_to_phalanx_onearray0.0440.0040.048
MM_refseq_to_protein_id0.2560.0040.806
MM_refseq_to_refseq_dna0.0720.0000.281
MM_refseq_to_refseq_peptide0.0720.0000.073
MM_refseq_to_rfam0.0040.0000.086
MM_refseq_to_rfam_gene_name0.0000.0000.002
MM_refseq_to_rfam_transcript_name0.0040.0000.002
MM_refseq_to_smart0.0240.0040.042
MM_refseq_to_tigrfam0.0040.0000.005
MM_refseq_to_ucsc0.0400.0000.039
MM_refseq_to_unigene0.0480.0000.047
MM_refseq_to_uniprot_genename0.0360.0000.035
MM_refseq_to_uniprot_genename_transcript_name0.0000.0000.002
MM_refseq_to_uniprot_sptrembl0.0040.0000.002
MM_refseq_to_uniprot_swissprot0.0000.0000.002
MM_refseq_to_uniprot_swissprot_accession0.0000.0000.001
MM_refseq_to_wikigene_id0.0000.0000.001
MM_refseq_to_wikigene_name0.0320.0000.034
TBL21.3680.0601.455
TBL2_HS1.6560.1682.452
TBL2_MM0.8240.1040.930
conv_id0.0040.0000.002
id_conv0.0320.0000.032