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INSTALL report for clusterSeq on tokay1

This page was generated on 2019-04-13 11:27:23 -0400 (Sat, 13 Apr 2019).

Package 280/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
clusterSeq 1.6.0
Thomas J. Hardcastle
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/clusterSeq
Branch: RELEASE_3_8
Last Commit: bc978ee
Last Changed Date: 2018-10-30 11:42:03 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: clusterSeq
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/clusterSeq_1.6.0.tar.gz && rm -rf clusterSeq.buildbin-libdir && mkdir clusterSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=clusterSeq.buildbin-libdir clusterSeq_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL clusterSeq_1.6.0.zip && rm clusterSeq_1.6.0.tar.gz clusterSeq_1.6.0.zip
StartedAt: 2019-04-12 19:51:10 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:51:54 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 44.6 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/clusterSeq_1.6.0.tar.gz && rm -rf clusterSeq.buildbin-libdir && mkdir clusterSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=clusterSeq.buildbin-libdir clusterSeq_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL clusterSeq_1.6.0.zip && rm clusterSeq_1.6.0.tar.gz clusterSeq_1.6.0.zip
###
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install for i386

* installing *source* package 'clusterSeq' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'clusterSeq'
    finding HTML links ... done
    associatePosteriors                     html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpmqlUPf/R.INSTALL1e185fc34fd8/clusterSeq/man/associatePosteriors.Rd:19: file link 'countData' in package 'baySeq' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpmqlUPf/R.INSTALL1e185fc34fd8/clusterSeq/man/associatePosteriors.Rd:33: file link 'countData' in package 'baySeq' does not exist and so has been treated as a topic
    cD.ratThymus-data                       html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpmqlUPf/R.INSTALL1e185fc34fd8/clusterSeq/man/cD.ratThymus-data.Rd:9: file link 'countData' in package 'baySeq' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpmqlUPf/R.INSTALL1e185fc34fd8/clusterSeq/man/cD.ratThymus-data.Rd:19: file link 'countData' in package 'baySeq' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpmqlUPf/R.INSTALL1e185fc34fd8/clusterSeq/man/cD.ratThymus-data.Rd:17: file link 'countData' in package 'baySeq' does not exist and so has been treated as a topic
    clusterSeq-package                      html  
    kCluster                                html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpmqlUPf/R.INSTALL1e185fc34fd8/clusterSeq/man/kCluster.Rd:20: file link 'countData' in package 'baySeq' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpmqlUPf/R.INSTALL1e185fc34fd8/clusterSeq/man/kCluster.Rd:70: file link 'countData' in package 'baySeq' does not exist and so has been treated as a topic
    makeClusters                            html  
    makeClustersFF                          html  
    plotCluster                             html  
    ratThymus-data                          html  
    wallace                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'clusterSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'clusterSeq' as clusterSeq_1.6.0.zip
* DONE (clusterSeq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'clusterSeq' successfully unpacked and MD5 sums checked
In R CMD INSTALL